3bf180ea1ae8fe2324f08fe627d3b85a *DESCRIPTION
2a7a60606cfc4f43e0cd855872722639 *NAMESPACE
88066d4a3186cebe0fa8d801100a42de *R/GUI_utils.R
f704c1eaaf6ed888b086d546e71fc920 *R/class_peakPantheRAnnotation.R
a050c4b7d83fd204bfd0a1e365e5f83b *R/curveFit_utils.R
d8f66f16364664f97fdacca1af935505 *R/extractSignalRawData.R
de3161dd26eea21713ad043ecffaf70e *R/findTargetFeatures.R
26bf2406d9f4e7594d9472dfc1052ace *R/generateIonChromatogram.R
8ceb7f5d131cd282f272248e52075b5f *R/getAcquisitionDatemzML.R
408d1ee10025b6a3e4b8dc523ddfb62e *R/getTargetFeatureStatistic.R
94f893cb58210ce53abb1ad7a4a2fc3a *R/initialize_peakPantheRAnnotation.R
541c5db020e0e20416355e9940dc4df8 *R/integrateFIR.R
409e5b7608873f6bf7f6a6bda8e3d94b *R/methods_peakPantheRAnnotation.R
2dd570d52a4f58a54f1745811a81e249 *R/peakPantheR.R
713b816cde7f07fd529040f301cff833 *R/peakPantheR_ROIStatistics.R
61e3f6e7c7a3d4596d33afb2ab6763c1 *R/peakPantheR_loadAnnotationParamsCSV.R
b217cca2a0f80e0e712314f63111f2ab *R/peakPantheR_parallelAnnotation.R
1a68c3070ba8e91939892c132e1c13d3 *R/peakPantheR_plotEICFit.R
52ba98560e925dba0d01d05f30231528 *R/peakPantheR_plotPeakwidth.R
1cb1ca34ba98309022484bc61281163c *R/peakPantheR_quickEIC.R
65763a5b8adca230e17a157576bfade1 *R/peakPantheR_singleFileSearch.R
f676ff2e5137675a34bfff726ae742a8 *R/peakPantheR_start_GUI.R
5030bedbf6818fd6cd03e965fbe0d463 *R/plotAnnotationDiagnosticMultiplot.R
f00cf4832b073756c1350321b81cf3d2 *R/plotEICDetectedPeakwidth.R
6ba83ae398e7ae78151906f67640418f *R/plotHistogram.R
2010b656453290163d1fac97c924c11b *R/rtCorrection_utils.R
f8651242c594750cd660fbbfa5976bf1 *R/saveSingleFileMultiEIC.R
920d3b532aed1ae48d6268e26713bfc0 *R/valid_peakPantheRAnnotation.R
c15b5e37ba77738a0903012bde7d8643 *R/zzz.R
182a8a35132c775bdb6e3eca4f0f2482 *README.md
1985c5ed74aac118a7bd1f7edae44571 *build/vignette.rds
0694ffe2f171d2b975cfc6de83bc2610 *inst/CITATION
ec362b8716d4b11ad396c2391295db39 *inst/NEWS
5dd02591f13875d1059bd239ed103465 *inst/doc/getting-started.R
8b7aed0e457d512b775bc6386546938b *inst/doc/getting-started.Rmd
74b662b05b4658e262da5e56c480bf7d *inst/doc/getting-started.html
5cbfea64e227c2b37365e3086e2c18be *inst/doc/parallel-annotation.R
bd864a4c5502a74a6a057c88012c4df6 *inst/doc/parallel-annotation.Rmd
2ab06a46915f8257102ed1d02a2092ed *inst/doc/parallel-annotation.html
686bf6dce286cb0dd28e9f45c32ba099 *inst/doc/peakPantheR-GUI.R
52d0b5c6f366b4fc56b6deae881f525e *inst/doc/peakPantheR-GUI.Rmd
a1ef22c548a5ac7ace9db15d94747ee3 *inst/doc/peakPantheR-GUI.html
12201c273dac5a349984319dc75f653f *inst/doc/real-time-annotation.R
7afb444f9e1c337a1621c85e59c2c0ed *inst/doc/real-time-annotation.Rmd
925cf7af5b5700099d7571d2516b9462 *inst/doc/real-time-annotation.html
cc16371a9e9e248a1d467fbfbaea9c25 *inst/extdata/test_fakemzML.mzML
d1ada598a7659e3322e8c3d0d7cdfb35 *inst/scripts/make_unittest_data.R
ee5da548bbe12458c8fab70c0a188d01 *inst/shiny-GUI/peakPantheR-App/data/about.html
b21323e8c55dc1c0b6bb9bfbdb25a2f7 *inst/shiny-GUI/peakPantheR-App/server.R
32a58195d0d79b714185bbe8df5af367 *inst/shiny-GUI/peakPantheR-App/server/server_diagnostic.R
d186864541aa8fbde94dac95d641f0fe *inst/shiny-GUI/peakPantheR-App/server/server_export.R
e0a92d0b5911a1fb8ecfe143ea5de677 *inst/shiny-GUI/peakPantheR-App/server/server_import.R
e6006bf8ac5d2e33263f9797eaa9b811 *inst/shiny-GUI/peakPantheR-App/server/server_results.R
e90d7648ede1e27f5e4e5ee67c617c99 *inst/shiny-GUI/peakPantheR-App/server/server_run.R
7e2384d29c0bda68b14fc2484ad5deb2 *inst/shiny-GUI/peakPantheR-App/ui.R
4ea065ceb4c424e0338dddb0156594cb *inst/shiny-GUI/peakPantheR-App/ui/ui_about.R
81ff06453e0d7669b8f823cb3fbc0a10 *inst/shiny-GUI/peakPantheR-App/ui/ui_diagnostic.R
dc2a0f6734497e59244334b3d6bcbb8f *inst/shiny-GUI/peakPantheR-App/ui/ui_export.R
ba32b1763d836a15918482107a9d75d9 *inst/shiny-GUI/peakPantheR-App/ui/ui_import.R
23b8749e0bb37ed6f6973506c1a5aaaa *inst/shiny-GUI/peakPantheR-App/ui/ui_results.R
5344179795d46ab92b26c55dd6eaf6e6 *inst/shiny-GUI/peakPantheR-App/ui/ui_run.R
8ac08a8843ffabfbbdce6025b6d766e2 *inst/shiny-GUI/peakPantheR-App/www/annot_progress.gif
6d8fe88b50205db9a0f7763cabc6c9a6 *man/EICs-peakPantheRAnnotation-method.Rd
9ba38bd246716c0b25ed46faede9e65e *man/FIR-peakPantheRAnnotation-method.Rd
bf164dd8cca7b02ac156aca1e9557494 *man/ROI-peakPantheRAnnotation-method.Rd
1ea5b27c4aec584babab0dcb38bb2405 *man/TIC-peakPantheRAnnotation-method.Rd
864740b31c42907b2cc75dc0bbf3db0c *man/acquisitionTime-peakPantheRAnnotation-method.Rd
73ae3be186e46ee9d83cdbc18d7b7106 *man/annotationDiagnosticMultiplot.Rd
46ffa20195cf48813b968cf82ff30a8e *man/annotationDiagnosticPlots-peakPantheRAnnotation-method.Rd
357dfa01905dffa602c0ba4137f8b288 *man/annotationParamsDiagnostic-peakPantheRAnnotation-method.Rd
128c7bf0b89d2be69b79180b2a6ff1db *man/annotationTable-peakPantheRAnnotation-method.Rd
12484557de50a696845d9347d01f1326 *man/annotation_diagnostic_multiplot_UI_helper.Rd
c135aa6ddfcd45e0cef69dc74112d715 *man/annotation_fit_summary_UI_helper.Rd
6924ffa3f7652c2880ab313d45457959 *man/annotation_showMethod_UI_helper.Rd
9a317cbb9579905d78f68fff5b1109ec *man/annotation_showText_UI_helper.Rd
1661e3280eb2da91d94f28b5e8bd6e3d *man/cpdID-peakPantheRAnnotation-method.Rd
00d63ca358aa9ef697933ea6475c2b9e *man/cpdMetadata-peakPantheRAnnotation-method.Rd
db4309fdff287d9addf961287e399a79 *man/cpdName-peakPantheRAnnotation-method.Rd
7119a6195985c443d1977e831440a856 *man/dataPoints-peakPantheRAnnotation-method.Rd
d60810da92f644f5d14dd1d565e6e78f *man/emgGaussian_guess.Rd
f1a9fb09a0fa73198dc759ddf7c156a8 *man/emgGaussian_minpack.lm.Rd
6f3e4841d77fd351a2f74df4867ffe66 *man/emgGaussian_minpack.lm_objectiveFun.Rd
9b08814e5b56eba536b90677c93022e2 *man/extractSignalRawData.Rd
271a32e6763df9ef9480c3cfd70b383e *man/figures/peakPantheR-logo.png
76ca8ae7c3a2577b803cd7d63ad1541f *man/filename-peakPantheRAnnotation-method.Rd
bca222060a30dab87290f7ba8bd83712 *man/filepath-peakPantheRAnnotation-method.Rd
84cf52c124e2e7403838003ac5154f85 *man/findTargetFeatures.Rd
80c36835425614b5706e1a26988ecf88 *man/fitCurve.Rd
ff7cf14f3b07f115bffc74b7880237fd *man/gaussian_cerf.Rd
38a62c8e1f4b316173b5f6c17011be76 *man/gaussian_erf.Rd
8f8c10013b0ffcc4f40e0eb556eb4bf7 *man/generateIonChromatogram.Rd
ec3692d5da9d0eb9e0b42328f15a10ad *man/getAcquisitionDatemzML.Rd
6f3e066e87cfd257bb3f7b9ac4817dd2 *man/getTargetFeatureStatistic.Rd
2e0c8515b63f4c418b6021d2f98c3dea *man/initialise_annotation_from_files_UI_helper.Rd
d292e5c823064dff373fd7b2b1a111a0 *man/integrateFIR.Rd
49b7c60d6d8ada453e92cadc13cf4f09 *man/is.peakPantheR_curveFit.Rd
86c102fa8eead9355ca746de196a5b05 *man/isAnnotated-peakPantheRAnnotation-method.Rd
34872c36cc64a782f44ee50b597fc8a3 *man/load_annotation_from_file_UI_helper.Rd
d88cc82ba0ab9a6f0a886fe0ebb256bc *man/nbCompounds-peakPantheRAnnotation-method.Rd
28f0dcefa80104aec8d62a66b32f8b0e *man/nbSamples-peakPantheRAnnotation-method.Rd
3ac6ca6c9a7fdf8d2b3b53444807c701 *man/outputAnnotationDiagnostic-peakPantheRAnnotation-method.Rd
6f27424a45f54194a74d19fcbfacf259 *man/outputAnnotationFeatureMetadata_UI_helper.Rd
8ee3d7a4e53954987a17a4c1f8165050 *man/outputAnnotationParamsCSV-peakPantheRAnnotation-method.Rd
d2f58a722c32ca9d0d2d8973c78a919a *man/outputAnnotationResult-peakPantheRAnnotation-method.Rd
61c7246d1760f987ce6be19e8ed2e7b5 *man/outputAnnotationSpectraMetadata_UI_helper.Rd
40d2d37961fd0923f0b335799fabd2ee *man/peakFit-peakPantheRAnnotation-method.Rd
cbcf85a34b73132a73b77ab6e1bbd2b9 *man/peakPantheR.Rd
642b4ae7c29d609dd38da6ddfb1803f4 *man/peakPantheRAnnotation.Rd
f47153dd6fec6b4db9b64e74adc3e9a5 *man/peakPantheR_ROIStatistics.Rd
a08e90ae0891630ce40fade110c76294 *man/peakPantheR_applyRTCorrection.Rd
717d410d5e852c24de4697b055c3bec9 *man/peakPantheR_loadAnnotationParamsCSV.Rd
06b066508bb62ceb4614aff377d92297 *man/peakPantheR_parallelAnnotation.Rd
ce35ba7e4af49fab7672da840d933903 *man/peakPantheR_plotEICFit.Rd
f9923a3c7b28619c10a232f6d4732be8 *man/peakPantheR_plotPeakwidth.Rd
f1d914adc19d0bef98b030506042a737 *man/peakPantheR_quickEIC.Rd
d873bd52bc851e762ff4a247fac34c8e *man/peakPantheR_singleFileSearch.Rd
ca6804bddb2fc34a17066890015d8cca *man/peakPantheR_start_GUI.Rd
041175f874e26387f7070d569c29f395 *man/peakTables-peakPantheRAnnotation-method.Rd
2c122e8a4716ded2a0922f3076f02704 *man/plotEICDetectedPeakwidth.Rd
5018527997de1735934b97bda92cf68a *man/plotHistogram.Rd
3e6a83c9ed7766c8a0d62928475013f8 *man/predictCurve.Rd
4c2fb66cc74b4ebc5bfccf91e93de715 *man/prepare_advanced_target_parameters.Rd
b559912a2db69e7cb6e419e571534d7a *man/prepare_basic_target_parameters.Rd
09baed8d56ed00d42a2e6714a2dfb33c *man/resetAnnotation-peakPantheRAnnotation-method.Rd
cfb1d927476222e1fe8cec6dd1fb2702 *man/resetFIR-peakPantheRAnnotation-method.Rd
dc8969602fe7b33b01d1f914fd0cee55 *man/retentionTimeCorrection-peakPantheRAnnotation-method.Rd
2441ac17c784621ffcbe7783e8311ce5 *man/saveSingleFileMultiEIC.Rd
6a97d0dcbfdf3a6598caf4052399c4ad *man/skewedGaussian_guess.Rd
ade539c820a26d66976359933578ea2a *man/skewedGaussian_minpack.lm.Rd
b1914527a18c2c349767660b4d2cc873 *man/skewedGaussian_minpack.lm_objectiveFun.Rd
b2cfe5f06ca6a2bce41c6b8fc375c13e *man/spectraMetadata-peakPantheRAnnotation-method.Rd
0aad31937e447397ea8461dac1d14a57 *man/spectraPaths_and_metadata_UI_helper.Rd
047c7148d8760c219279067be8e0d823 *man/spectra_metadata_colourScheme_UI_helper.Rd
981e95ceb6a76a09965ca7bde2c1d068 *man/sub-peakPantheRAnnotation-ANY-ANY-ANY-method.Rd
7f04c6ced2d422f5e042d82c2218c723 *man/uROI-peakPantheRAnnotation-method.Rd
d5ea2562182a97bdfb352113c9d510bd *man/uROIExist-peakPantheRAnnotation-method.Rd
227dc58913bf597dd179f26b0b13b5aa *man/useFIR-peakPantheRAnnotation-method.Rd
2b2140744210abad9589863d1627c182 *man/useUROI-peakPantheRAnnotation-method.Rd
fdac5aadee98828f8e82043c680f55d8 *tests/testthat.R
34c200b8a62332de52064319c2698fda *tests/testthat/test_annotationDiagnosticMultiplot.R
db4b85b20cdbf261849e427127f8ae62 *tests/testthat/test_annotation_diagnostic_multiplot_UI_helper.R
b0156f0de887dfd8d4942e4f3de296c3 *tests/testthat/test_annotation_fit_summary_UI_helper.R
884f02cd7e60802360c773fbb1fe285d *tests/testthat/test_annotation_showMethod_UI_helper.R
c73353f874868ef189d88e1335092690 *tests/testthat/test_annotation_showText_UI_helper.R
b3f989555048208386d1cb818b54352b *tests/testthat/test_centroid_continuum_reader.R
e2b361b4217b252114261ccdb3081737 *tests/testthat/test_continuum_mode.R
4754451414b696b626f991eda9c5ad73 *tests/testthat/test_emgGaussian_utils.R
d65a59bd4b9032c0c9730b2185eb0a41 *tests/testthat/test_extractSignalRawData.R
ca4bcdf95398fbe13b3d59f9949038d0 *tests/testthat/test_findTargetFeatures.R
72e76b658cb0d33ee276429cdd2bfab3 *tests/testthat/test_fitCurve.R
b3a8440c1f11f1db062179f176956f28 *tests/testthat/test_generateIonChromatogram.R
0e8dc98f3ea14e491284a8529239b028 *tests/testthat/test_getAcquisitionDatemzML.R
e2ef7da6c17cdb69a6f77c6cee80fc98 *tests/testthat/test_getTargetFeatureStatistic.R
30d780008e7ef0291d558736da8425d2 *tests/testthat/test_initialise_annotation_from_files_UI_helper.R
c02f3f34dbb3193fcf887ac1e9287baa *tests/testthat/test_integrateFIR.R
82bc6ea108f56017e7ceb83a64fc3ba6 *tests/testthat/test_load_annotation_from_file_UI_helper.R
1e5c64d65fa1270b41fe6e84915e8dcd *tests/testthat/test_outputAnnotation_UI_helpers.R
418b31a664e1f248795084ddd58022c9 *tests/testthat/test_peakPantheRAnnotation_accessor-method.R
50b8a35c223779fb74abd461fbe1001d *tests/testthat/test_peakPantheRAnnotation_annotationDiagnosticPlots-method.R
3efb373b7f65419922a32a4db66c96da *tests/testthat/test_peakPantheRAnnotation_annotationParamsDiagnostic-method.R
49fd6f3089aa4393acf62ed558aecbc6 *tests/testthat/test_peakPantheRAnnotation_class_initialize-method.R
e670a346255fa4b9defaaba75f3e90e1 *tests/testthat/test_peakPantheRAnnotation_extract-method.R
9cb1c717c8e2ceb2ed3600de23f5e26e *tests/testthat/test_peakPantheRAnnotation_outputAnnotationDiagnostic-method.R
208a3279de7b28529d9a7e9c27231d3d *tests/testthat/test_peakPantheRAnnotation_outputAnnotationParamsCSV-method.R
104070bf5637e9f9a0cb12d69f6b6fe8 *tests/testthat/test_peakPantheRAnnotation_outputAnnotationResult-method.R
2a6fb51cba012d2a8e75ecc54d65514b *tests/testthat/test_peakPantheRAnnotation_resetAnnotation-method.R
556c60ea1a183e41e23ddbdf42f82350 *tests/testthat/test_peakPantheRAnnotation_resetFIR-method.R
557c83cd839a2d7185bd69a405297619 *tests/testthat/test_peakPantheRAnnotation_retentionTimeCorrection-method.R
25b8fc9a02a84722d43138e4e960d311 *tests/testthat/test_peakPantheRAnnotation_show-method.R
4b710f96937ebe1d61b959f20ea2ba26 *tests/testthat/test_peakPantheRAnnotation_validObject-method.R
60d91695859b3e024c5635d3d72c5dee *tests/testthat/test_peakPantheR_ROIStatistics.R
dd62526a36ea1227e219d3c736f876a0 *tests/testthat/test_peakPantheR_applyRTCorrection.R
889e2f9aab7ebc46b4730eab204ccee7 *tests/testthat/test_peakPantheR_loadAnnotationParamsCSV.R
e2f766e7ded9411c9b89d61aab934a0c *tests/testthat/test_peakPantheR_parallelAnnotation.R
eb7cf0f7321da915904a96f3d0abaf13 *tests/testthat/test_peakPantheR_plotEICFit.R
0ae2fff7319f9b2f1e293a6cfbd298fa *tests/testthat/test_peakPantheR_plotPeakwidth.R
d83890daca0a4dad16aceed900eba21e *tests/testthat/test_peakPantheR_quickEIC.R
28e2767be8a6bc56c1a03cb89f992f34 *tests/testthat/test_peakPantheR_singleFileSearch.R
a69360ccaf81b74ea539803aa7da6363 *tests/testthat/test_plotEICDetectedPeakwidth.R
c97fe0f64486ef908d5a2b1fc26b94da *tests/testthat/test_plotHistogram.R
00f1ed5ebe479ea842c21307c31b35b5 *tests/testthat/test_predictCurve.R
9ad1ee83f044ac2a0ac554b9e87e9e6a *tests/testthat/test_saveSingleFileMultiEIC.R
a5bd7e796bb29ab0054a16231fd01f22 *tests/testthat/test_skewedGaussian_utils.R
ac6f79db4e335b668d57c9ed05ecd8db *tests/testthat/test_spectraPaths_and_metadata_UI_helper.R
023806a878aa84931136eb8a333255ab *tests/testthat/test_spectra_metadata_colourScheme_UI_helper.R
b5f34164b898ed99927ee06b2a695ca5 *vignettes/figures/01-import_RData.png
f3787fd64c0d959f6de8ed4455a0508e *vignettes/figures/02-import_CSV.png
0309adce4e66af68107d685c63ca1a72 *vignettes/figures/03-Run_annotation.png
fa607d44e5c0fd74db9c9fbeb3ab9599 *vignettes/figures/04-Diagnostic_statistics.png
65aab7c9e6d1bcba116cecfc98544885 *vignettes/figures/05-Diagnostic_updateUROIFIR.png
a1d31120472403ab583a6d499c8af6f5 *vignettes/figures/06-Diagnostic_plot.png
33ff46021e5a9b4032148e6dddfe3b0e *vignettes/figures/07-Results_Overall.png
f391a259137dadc09147b9dd119f34e8 *vignettes/figures/08-Results_byFeature.png
f963d164578f4300588452842d49167d *vignettes/figures/09-Results_bySample.png
4d05d46f1ee9e5232da6ade8c4a9fc3a *vignettes/figures/10-Export.png
bb0b04bd71d544fe3d48835860ee295e *vignettes/figures/example-UI.png
6ac0a434e248a9512abe37dfda84c97c *vignettes/figures/parallelAnnotation.png
ac8be5d02454be2669cdd7865bc24031 *vignettes/figures/parallelAnnotation_procedure.png
1351e625ae6641f36616f40f0da3dbd5 *vignettes/figures/parallel_annotation_diagnostic_cpd1.png
3cf65efb1b0e60b7c5a2386e7452ffb6 *vignettes/figures/singleFileSearch_EICsPlot.png
8b7aed0e457d512b775bc6386546938b *vignettes/getting-started.Rmd
bd864a4c5502a74a6a057c88012c4df6 *vignettes/parallel-annotation.Rmd
52d0b5c6f366b4fc56b6deae881f525e *vignettes/peakPantheR-GUI.Rmd
7afb444f9e1c337a1621c85e59c2c0ed *vignettes/real-time-annotation.Rmd
71ec6a5a36e1e71a8280b0b53326cd9f *vignettes/references.bib
