a1de4ea94deb52bf1859b55447976d1a *DESCRIPTION
6ce4103a0d5020f0c8d9c0205be81e12 *NAMESPACE
78e41a5c677413e2ee5b171a6298db5c *R/AllGenerics.R
dc5b91255748a2edbc033a4279073fb1 *R/DelayedArray_utils.R
9bf6b9f37c6ff98b9dadfe39c959cb4b *R/GenomicMethylSet-class.R
041b46cd3451c5fed80363bd6f8c5eb1 *R/GenomicRatioSet-class.R
690148b3a8adbde0e5ed9cd3e9972246 *R/IlluminaMethylationAnnotation-class.R
1dca969f22a1cd23503b035f985b7fc0 *R/IlluminaMethylationManifest-class.R
1e5a7d9932cb66884b3f7adabcead079 *R/MethylSet-class.R
43547b611e89355f49311a79f7cb960e *R/RGChannelSet-class.R
13c93511579d40321e12b33208ac718d *R/RGChannelSetExtended-class.R
b21fbe3d62c4fc4564b24dce315b0f6a *R/RatioSet-class.R
34fb189eccbb1cf4364b91f42ceaedc0 *R/blocks.R
739820eb4fadacb205f079a4f614a585 *R/bumphunter.R
78808ab0047aec76d4f12ec0941deb2d *R/combineArrays.R
5658f106faf49736bd93df55a295c04b *R/compartments.R
532828cf338ee204146618e5d02e2379 *R/detectionP.R
d9e6b2d0d7fb5336e85992e619882bc3 *R/dmpFinder.R
369733ba4c81d55651fdf2ed4f07035e *R/eSet_methods.R
31e03319a38207448621cd1901ee93d2 *R/estimateCellCounts.R
9ae50aa6725bcf30c5e23221135e2d82 *R/gaphunter.R
1dc980961cc18ea004347bc71eb2913e *R/getSex.R
c54be224fba27f269009ec680cf5e4ad *R/minfiQC.R
99e0b729cbf42324e93ab118a2571222 *R/plot.R
a0fabcd6de28762c234db982272c7468 *R/plotBetasByType.R
e7543f8a5c0ba0313f1e62437a114f5e *R/preprocessFunnorm.R
01a9947937e614c07fd75b433b95c18c *R/preprocessIllumina.R
5cc065e655da4ce7cc37354858b7495b *R/preprocessNoob.R
b0a4b24a1eb6fd7548bab86e98fc84c7 *R/preprocessQuantile.R
b8bbc9f94ef25117a83ae20d49c264c3 *R/preprocessRaw.R
57127444ed4569acb52c2f27c92db9cc *R/preprocessSwan.R
1bfeb77a180a6600d9f5e97129f7708b *R/qc.R
7cd4172334fa7eaa1ab932a711d4d8f1 *R/read.450k.R
1cb0d8e06ef60e98519ba7757637b8ff *R/read.geo.R
19c851614ff2ba655983b99b9af54bf4 *R/read.manifest.R
2c7276f8d7e26b0c0527d65321f7a85c *R/read.meth.R
81443cffdd94b30c30f4e3a5a56e709b *R/read.meth2.R
5a229789027be5ccbeb5f49ca4f4090f *R/utils.R
36a447d34d4952bedec836e79fe13f59 *README.md
4f16a536783c70a02269fc446dfc35dd *build/vignette.rds
698cbf1c6a550ae2f037dc79a36dec18 *inst/CITATION
2fa89c380a62716bfb35b192d005d45e *inst/NEWS.Rd
6f7bd7045026471ec2cf298627d11a58 *inst/doc/minfi.R
35eca63ac4ce0dbe87ed1888d804bf45 *inst/doc/minfi.Rmd
e7e525917ba6b707368cb31cb169fb45 *inst/doc/minfi.html
9dc7ab6ea6db645c97f9e21e0c4a58bc *inst/scripts/GenomeStudio.R
68d63a674acedcbe180ab35192499aec *inst/testData/testData_compartments.R
61ddea14dca1446743e81ec03c938cde *inst/testData/testData_compartments.Rout
6de44fa1016b32f803b833a8a9ca9145 *inst/testData/testData_preprocessFunnorm.R
3762d0a5b9674f705737a0e01cec9710 *inst/testData/testData_preprocessFunnorm.Rout
31afe757229ecdcff69d40640f190e43 *inst/testData/testData_preprocessIllumina.R
ade78fd56f55723ffb53d0d205047e9b *inst/testData/testData_preprocessIllumina.Rout
f523e7472561e8f92994884020d84d30 *inst/testData/testData_preprocessNoob.R
14020735e9b5104e5a3e15f6729ec494 *inst/testData/testData_preprocessNoob.Rout
50831c748e2169bbfe6147e79c40c9fa *inst/testData/testData_preprocessQuantile.R
c3e2b690cd06e98d3dd13702310fd873 *inst/testData/testData_preprocessQuantile.Rout
003f2cd4b27585dc985504afc6a0eba0 *inst/testData/testData_preprocessRaw.R
3c81e6e09d34cbca1bb8064b9a89e9f0 *inst/testData/testData_preprocessRaw.Rout
a010a8652fa4abe3e3ee7154c73f9474 *inst/testData/testData_preprocessSWAN.R
012d2d3f7098d73041e84b217c0f87d4 *inst/testData/testData_preprocessSWAN.Rout
eac8be45322b9f344389ad037973885a *inst/unitTests/digest_compartments.rda
cc0562bfe6283245c7ef91ded80b19e9 *inst/unitTests/digest_preprocessFunnorm.rda
620654468ccd535fb715d70668b8ff42 *inst/unitTests/digest_preprocessIllumina.rda
b8ed0815e96355b06dce97c2f3361a44 *inst/unitTests/digest_preprocessNoob.rda
c274230c2d66deb254659b86494a1378 *inst/unitTests/digest_preprocessQuantile.rda
41eb6d52d4d7fd71a2f533777bdf4386 *inst/unitTests/digest_preprocessRaw.rda
dae2d588bec4bde022fbdc919e514ed2 *inst/unitTests/digest_preprocessSWAN.rda
bc13cdc0471ee04cddf859120489fb57 *inst/unitTests/test_base.R
a7c4073f24fda16a243c0472dd5b12ac *inst/unitTests/test_compartments.R
e6b796acb58cb32a367e8019217e5480 *inst/unitTests/test_examples_with_DelayedArray.R
7d7451317e71155bbd0e452c45dd2c2e *inst/unitTests/test_preprocess.R
cf39085d521ae62b0c5f27f40976edc0 *inst/unitTests/test_qc.R
fa55899db8a5f5ed5942ca5d92f1c2fe *man/DelayedArray_utils.Rd
4ca8c34c480028b1edab05a924e3b070 *man/GenomicMethylSet-class.Rd
82d362aceed316bfda7f4152f6ed3f89 *man/GenomicRatioSet-class.Rd
c2d4a3e970de4c59acacfa6f1c3bda3f *man/IlluminaMethylationAnnotation-class.Rd
396885f3b0b27344fe6664ba35fa0abc *man/IlluminaMethylationManifest-class.Rd
ce4b67a79e2a6e5e903c9ac09520eee7 *man/MethylSet-class.Rd
8c2250c52bd5bf1b2690cd994c302a08 *man/RGChannelSet-class.Rd
ef1e77ae420a53811b548ca47956d5dd *man/RatioSet-class.Rd
fb57ff45d96c2639b49e9c41363577dc *man/blockFinder.Rd
570480d2d77555f55c5cc0083d17c971 *man/bumphunter.Rd
754fd14547469e6c11cc5810539b24da *man/combineArrays.Rd
8af8b432e9d13bc534185523ade8ad22 *man/compartments.Rd
d6fea4520d374460618aac042e80d9fd *man/controlStripPlot.Rd
15ea920560acc0597298d0576a414dfa *man/convertArray.Rd
eca89945127065bcc72dd4ea0984329d *man/cpgCollapse.Rd
2608cb3b29371aaed52ede686212e2d5 *man/densityBeanPlot.Rd
c46a2944080f446210e1b68271f22e90 *man/densityPlot.Rd
fd3d2df662093a2678825c049b5f4722 *man/detectionP.Rd
2addb92ff8b029f8269c86bad6e16459 *man/dmpFinder.Rd
5af5c4be983d4e16954baca47d622ebe *man/estimateCellCounts.Rd
b9b31fe8d6b7cb72ae2cb2ff4455927b *man/fixMethOutliers.Rd
b6758634d6f45c01f0e909bd83c8c790 *man/gaphunter.Rd
79f64654ccaebb334df004117d34bdab *man/getAnnotation.Rd
9c994da993ba663acb9369a647602143 *man/getGenomicRatioSetFromGEO.Rd
b5ecb3acf9250a3a9885dcb719543e7b *man/getQC.Rd
31af1997afc1893911e8e2049340ef12 *man/getSex.Rd
8df39a914a97f138dc2f8a3c9f00fd7e *man/logit2.Rd
e9366dd42d5d6b2d16d199c269932e5c *man/makeGenomicRatioSetFromMatrix.Rd
594de59fdc26014865dbbdbc4060ee39 *man/mapToGenome-methods.Rd
379768c3b3c095e6dfb91e3df4d29a51 *man/mdsPlot.Rd
b2ed04949dc0ed8f6a2c16e92246753a *man/minfi-defunct.Rd
60949fbf60fc9abe683c35974297944d *man/minfi-deprecated.Rd
78cae00d52d6993d6ea123332143a1c8 *man/minfi-package.Rd
5a904b59a19e458fce924a844ee07ac0 *man/minfiQC.Rd
a3cec1fdfb81c29ec027903a07f20878 *man/plotBetasByType.Rd
f3b3a11b352d18e448995e2d7bbe3839 *man/plotCpg.Rd
d37273c141ee0dd2441546efca354724 *man/preprocessFunnorm.Rd
2b3b77645482dae83ff9a5e9fea69137 *man/preprocessIllumina.Rd
ff21c22400f3e5e880add1c582fa7e80 *man/preprocessNoob.Rd
35186cfece438755b111510e1e29fb08 *man/preprocessQuantile.Rd
1265aad330cfd783cd40f9e9ff02e3e2 *man/preprocessRaw.Rd
914bfa5a0f44d466267670cf42e0e4c9 *man/preprocessSwan.Rd
f5dd881ee1619a50d7c7c980651c6dac *man/qcReport.Rd
b70145018d9029a82d362c400ce936e0 *man/ratioConvert-methods.Rd
ffbcc4188f035d71a7a74fe86db484b1 *man/read.metharray.Rd
d3aac97e7db2be1167eecf4c20c2fc53 *man/read.metharray.exp.Rd
b13a6e6f314d08908e3c2392d3c102de *man/read.metharray.sheet.Rd
f2ec00ae004abca8de928740e8c6042e *man/readGEORawFile.Rd
509bf336cba5bd96cf141bfad5fcfcd7 *man/readTCGA.Rd
0f30ec9be56058ef91cfef4005d004cb *man/subsetByLoci.Rd
2bc63fa53284d031401b378eb7c26ea1 *man/utils.Rd
29ca507b253b06e58076c7263560102b *tests/runTests.R
35eca63ac4ce0dbe87ed1888d804bf45 *vignettes/minfi.Rmd
99b33a536b6d999f4ac87fc867745f0b *vignettes/minfi.bib
0965dd670126f91f8f3c8d63cc80f16e *vignettes/minfiClasses.pdf
5d6f499393dd434a48afe14a941264a5 *vignettes/minfi_old.Rnw_
6dba948ed4967075b518b74bb6068152 *vignettes/minfi_tmp.Rnw_
8a5ad410844b8f334847b40353467211 *vignettes/unsrturl.bst
