@article{compartments,
  author =	 {Fortin, Jean-Philippe and Hansen, Kasper D},
  title =	 {{Reconstructing A/B compartments as revealed by Hi-C using long-range correlations
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  journal =	 {Genome Biology},
  volume =	 {16},
  pages =	 {180},
  doi =		 {10.1186/s13059-015-0741-y},
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@article{funnorm,
  author =	 {Fortin, Jean-Philippe and Labbe, Aur{\'e}lie and Lemire, Mathieu and Zanke, Brent
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  title =	 {{Functional normalization of 450k methylation array data improves replication in
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  journal =	 {Genome Biology},
  year =	 {2014},
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  number =	 {11},
  pages =	 {503},
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@article{noob,
  author =	 {Triche, Timothy J and Weisenberger, Daniel J and Van Den Berg, David and Laird,
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  number =	 {7},
  pages =	 {e90},
  doi =		 {10.1093/nar/gkt090},
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@article{minfi,
  author =	 {Aryee, Martin J and Jaffe, Andrew E and Corrada Bravo, Hector and Ladd-Acosta,
                  Christine and Feinberg, Andrew P and Hansen, Kasper D and Irizarry, Rafael A},
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  year =	 {2014},
  volume =	 {30},
  number =	 {10},
  pages =	 {1363--1369},
  doi =		 {10.1093/bioinformatics/btu049},
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@article{minfiEPIC,
  title =	 {Preprocessing, normalization and integration of the {Illumina}
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  year =	 {2017},
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  journal =	 {Bioinformatics},
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  year =	 {2011},
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  number =	 {6},
  pages =	 {692--702},
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  pages =	 {587},
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@article{Bibikova:2011,
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  number =	 {4},
  pages =	 {288--295},
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@article{Dedeurwaerder:2011,
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  year =	 {2011},
  volume =	 {3},
  number =	 {6},
  pages =	 {771--784},
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  author =	 {Maksimovic, Jovana and Gordon, Lavinia and Oshlack, Alicia},
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  number =	 {6},
  pages =	 {R44},
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  pages =	 {264},
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  pmid =	 {24701342},
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@article{Touleimat:2012,
  title =	 {Complete pipeline for Infinium(\textregistered{}{}) {Human} {Methylation} {450K}
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  author =	 {Touleimat, Nizar and Tost, J{\"{o}}rg},
  journal =	 {Epigenomics},
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  number =	 {3},
  pages =	 {325--341},
  year =	 {2012},
  pmid =	 {22690668},
  doi =		 {10.2217/epi.12.21}
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@article{bumphunter,
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  author =	 {Jaffe, Andrew E and Murakami, Peter and Lee, Hwajin and Leek, Jeffrey T and
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  pages =	 {200--209},
  year =	 {2012},
  pmid =	 {22422453},
  doi =		 {10.1093/ije/dyr238}
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@article{gaphunter,
  title =	 {"{Gap} hunting" to to characterize clustered probe signals in {Illumina}
                  methylation array data},
  year =	 {2016},
  author =	 {Andrews, Shan V and Ladd-Acosta, Christine and Feinberg, Andrew P and Hansen,
                  Kasper D and Fallin, M Daniele},
  journal =	 {Epigenetics and Chromatin},
  volume =	 {9},
  pages =	 {56},
  doi =		 {10.1186/s13072-016-0107-z},
  pubmed =	 {27980682},
  pmcid =	 {PMC5142147}
}


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