Package: lisaClust
Type: Package
Title: lisaClust: Clustering of Local Indicators of Spatial Association
Version: 1.21.7
Authors@R: c(
    person("Ellis", "Patrick", , "ellis.patrick@sydney.edu.au", role = c("aut", "cre")),
    person("Nicolas", "Canete", , "nicolas.canete@sydney.edu.au", role = "aut"),
    person("Nicholas", "Robertson", , "nicholas.robertson@sydney.edu.au", role = "ctb"),
    person("Alex", "Qin", , "alex.qin@sydney.edu.au", role = "ctb"),
    person("Shreya", "Rao", email = "shreya.rajeshrao@sydney.edu.au", role = "ctb"),
    person("Farhan", "Ameen", email = "fame2827@uni.sydney.edu.au", role = "ctb")
  )
Description: lisaClust provides a series of functions to identify and visualise 
    regions of tissue where spatial associations between cell-types is similar.
    This package can be used to provide a high-level summary of cell-type 
    colocalization in multiplexed imaging data that has been segmented at a 
    single-cell resolution.
License: GPL (>=2)
Copyright: The C++ port of concaveman in src/core: see inst/COPYRIGHTS.
biocViews: SingleCell, CellBasedAssays, Spatial
Encoding: UTF-8
Depends: R (>= 4.1.0)
VignetteBuilder: knitr
BugReports: https://github.com/ellispatrick/lisaClust/issues
URL: https://ellispatrick.github.io/lisaClust/,
        https://github.com/ellispatrick/lisaClust
Imports: Rcpp, ggplot2, deldir, polyclip, grid, BiocParallel,
        spatstat.explore, spatstat.geom, BiocGenerics, S4Vectors,
        methods, stats, dplyr, SingleCellExperiment, SpatialExperiment,
        SummarizedExperiment, pheatmap, spatstat.random, lifecycle,
        rlang (>= 1.0.0)
Suggests: SpatialDatasets, spicyR, tidySpatialExperiment, BiocStyle,
        knitr, rmarkdown, testthat (>= 3.0.0)
LinkingTo: Rcpp
SystemRequirements: C++17
Config/testthat/edition: 3
Config/roxygen2/version: 8.1.0
git_url: https://git.bioconductor.org/packages/lisaClust
git_branch: devel
git_last_commit: 262fe35
git_last_commit_date: 2026-10-09
Repository: Bioconductor 3.24
Date/Publication: 2026-10-11
NeedsCompilation: yes
Packaged: 2026-10-11 22:35:20 UTC; biocbuild
Author: Ellis Patrick [aut, cre],
  Nicolas Canete [aut],
  Nicholas Robertson [ctb],
  Alex Qin [ctb],
  Shreya Rao [ctb],
  Farhan Ameen [ctb]
Maintainer: Ellis Patrick <ellis.patrick@sydney.edu.au>
