Package: glycoTraitR
Type: Package
Title: Compute and analyze the glycan structrual traits from GPSM data
Version: 0.99.2
Authors@R: c(person("Bingyuan", "Zhang",
              email = "zhang.bingyuan.w8@f.mail.nagoya-u.ac.jp",
              role = c("aut", "cre"),
              comment = c(ORCID = "0000-0002-4892-323X")), 
             person("Koichi", "Himori",
              email = "himori.koichi.b5@f.mail.nagoya-u.ac.jp",
              role = c("aut")),
             person("Yusuke", "Matsui",
              email = "matsui.yusuke.d4@f.mail.nagoya-u.ac.jp",
              role = c("aut", "fnd")))
Description: 
    GlycoTraitR is an R package for analyzing glycoproteomics data, 
    particularly glycopeptide-spectrum matches (GPSMs). It supports results 
    generated by the pGlyco3 and Glyco-Decipher search engines. 
    The package parses glycan structures, computes monosaccharide compositions 
    and structural traits, and performs differential analysis of glycan 
    heterogeneity. It constructs trait-by-PSM matrices stored in a 
    SummarizedExperiment object, supports user-defined structural motifs, 
    and provides visualization utilities for interpreting glycan trait changes.
URL: https://github.com/matsui-lab/glycoTraitR
License: MIT + file LICENSE
Encoding: UTF-8
Imports: igraph, SummarizedExperiment, pbapply, car, ggplot2, rlang
Suggests: knitr, BiocStyle, rmarkdown, markdown, testthat (>= 3.0.0)
biocViews: Proteomics, MassSpectrometry, Visualization, Software
RoxygenNote: 7.3.3
VignetteBuilder: knitr
BugReports: https://github.com/matsui-lab/glycoTraitR/issues
Depends: R (>= 4.5.0)
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/glycoTraitR
git_branch: devel
git_last_commit: 9be6f65
git_last_commit_date: 2026-01-29
Repository: Bioconductor 3.23
Date/Publication: 2026-02-09
NeedsCompilation: no
Packaged: 2026-02-09 22:56:38 UTC; biocbuild
Author: Bingyuan Zhang [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-4892-323X>),
  Koichi Himori [aut],
  Yusuke Matsui [aut, fnd]
Maintainer: Bingyuan Zhang <zhang.bingyuan.w8@f.mail.nagoya-u.ac.jp>
