106336a1e731a3b33179551258772d76 *DESCRIPTION
1550653a3678282831b0f88b4ac2e4b9 *LICENSE
09ca7c406ab0b369af3b3e489b77f086 *NAMESPACE
568dad16ce86ddd18ae520e51a5f4e34 *NEWS.md
b866e218107e96747a3d77e758d882ca *R/addGeneInfo.R
019d1bbe126466890f83a846cd3e6a9b *R/alignCenterId.R
34603f1a95c68bcd65cb453669acdcb8 *R/checkAndGetGeneModels.R
ebdd1d418d77e32ff4a079dfcb0cf241 *R/fromOrthogroups.R
c8b3d3fdd70a0ec5d0a6549e38e286a5 *R/geneClusterPattern.R
46acf9290a8d5c2d5ae1be88784f7854 *R/geneOrderScore.R
188e351e5e99277d9cd5ba364a2ca044 *R/getGeneCluster.R
c88728c2bb401d2ffcc915e6c8a08a35 *R/getGeneModel.R
6794afff52365e3146adedc451e0916d *R/getGenePattern.R
8a2ef9eb0b1a655f72f6c69c3d9de34a *R/getGeneRank.R
ed792cb759cf2a2a875a86c8c480a51d *R/getGeneRankList.R
f02e2530068cb059db016e310acf85fe *R/getHomologGeneList.R
047bd591f7fece651af1c7142e075054 *R/grangesFromEnsemblIDs.R
8b1f406bef3e2099edce13112876ad88 *R/guessSpecies.R
96d9cfdfc2c7d4218fadab3d9fcbed24 *R/homologsFromEnsemblIDs.R
ae214be8a8854fe57d8710149945d238 *R/orthoFinder.R
a9040b498bb811301571cc067763841d *R/pasteReplaceLast.R
2224a6268fafbbc404b612645f846096 *R/plotGenePatterns.R
0c6f311366b1abbf6f51d6cd23648e7a *R/plotOneTrack.R
a48cb233a1f430ae3cb375263a0446b6 *R/pruningSequences.R
6a4c9f86a0131bb22a037553802ce89e *R/rescaleRegion.R
d1a1bf460ab0a15b6de09433b770af96 *R/sysdata.rda
aa88d91154e06b7f4eb5c034ab518636 *README.md
04fbbca2071a20fcdb0ad94b3adc0212 *build/vignette.rds
4137600ea0e76461f23e9284034d930f *inst/doc/vignette.R
fc5631f26fc0dbae9b8526e3a8e8162c *inst/doc/vignette.Rmd
8d81eb994d456ad0c4e0f2216d290ca6 *inst/doc/vignette.html
17f50c60c2e60a7d8acf03678af3a0ff *inst/extdata/fish.rds
5099f6a0ee77f8a7634a7a080ff89a30 *inst/extdata/homologs.rds
3ca7192004cad962b82c1d5e9d1e5426 *inst/extdata/orthofinder/Danio_rerio.GRCz11.pep.all.tsv.gz
13a568cec91dc5f3ca022dc5fe7417e9 *inst/extdata/orthofinder/Orthogroups.tsv.gz
ba2d16be6ba97c3c7ef4e54dfe617bc1 *inst/extdata/orthofinder/grange.obj.rds
b7ce22a6ddf4fcf4ccf82b83dbc8b199 *inst/extdata/scripts/README.md
ef0c2b4f9fd9311148d37be25b02ab66 *inst/extdata/scripts/createNameTable.R
9bcda97abe58f99c8475faee22845677 *inst/extdata/scripts/createOrthogroups_grange.obj.rds.R
319a9d987e7abff3c651ffa1f98c15c0 *inst/extdata/scripts/fish_homologs.R
159a440b1fb00472ca52213d802fe7b9 *inst/extdata/scripts/orthofinder.sh
7f81d8820126918eae9d5de179573351 *inst/extdata/taxonomy_names.rds
0e73aa1b9350d537283dd69f8eb156cd *man/figures/logo.png
f21e2bfff3c50f802f49f14d8cba21ec *man/fromOrthogroups.Rd
343af21d35f699683aac0bdc17f58e7f *man/geneClusterPattern-package.Rd
08e88ceb5d69b30dcbbb540f4c446b9a *man/geneOrderScore.Rd
59557b5044c57383628ec14440b3d583 *man/getGeneCluster.Rd
d89fd00546f9690b70ee321e0a27949b *man/getGeneRank.Rd
2ced17fafb58001d7ee10d0afe6bffc5 *man/getHomologGeneList.Rd
c5ff4391125470e0fd507d575ebccff5 *man/getHomologListForOrthoFinder.Rd
cd366b8a2fd50e0178978990f915448d *man/grangesFromEnsemblIDs.Rd
b10c3e869554b03dc3bc6f8dbb32b543 *man/guessSpecies.Rd
2b75bf9b0ed3efeff12e4754a8bb0918 *man/homologsFromEnsemblIDs.Rd
1bc51f3851b3d492123d3ebedff6c485 *man/orthologPairsFromOrthoFinder.Rd
93ee462b5044597ea5bb85b607ea042c *man/plotGeneClusterPatterns.Rd
8478aec10c52acd25441fefea44622fc *man/pruningSequences.Rd
faf0939edb73281df6121ba8f2da75e5 *tests/runTests.R
2bd932ec85a13b33935ec2193946e08d *tests/testthat/test_cluster.R
fc5631f26fc0dbae9b8526e3a8e8162c *vignettes/vignette.Rmd
