Package: geneClusterPattern
Type: Package
Title: Plot conserved gene pattern across multiple species
Version: 0.99.2
Authors@R: c(person(given="Jianhong", family="Ou", email="jou@morgridge.org", 
        role=c("aut", "cre"), comment=c(ORCID="0000-0002-8652-2488")),
        person(given='Kenneth', family='Poss', email='kposs@morgridge.org',
        role=c('aut', 'fnd')))
Description: An R package for constructing and comparing ortholog gene patterns 
    around a focal gene across species. It enables the exploration of conserved
    gene neighborhoods (synteny) by organizing orthologous genes within a 
    defined genomic window and aligning their relative positions across 
    multiple genomes. It can retrieve homologous gene directly from Ensembl or 
    it can incorporate user-provided ortholog group assignments.
License: MIT + file LICENSE
biocViews: Visualization
VignetteBuilder: knitr
RoxygenNote: 8.0.0
Encoding: UTF-8
URL: https://github.com/jianhong/geneClusterPattern
BugReports: https://github.com/jianhong/geneClusterPattern/issues
Depends: R (>= 4.6.0)
Imports: BiocGenerics, Biostrings, pwalign, GenomeInfoDb,
        GenomicRanges, grDevices, IRanges, RANN, biomaRt, grid,
        methods, Seqinfo, stats, trackViewer, utils
Suggests: org.Dr.eg.db, BiocStyle, knitr, rmarkdown, testthat,
        S4Vectors
git_url: https://git.bioconductor.org/packages/geneClusterPattern
git_branch: devel
git_last_commit: a879182
git_last_commit_date: 2026-09-15
Repository: Bioconductor 3.24
Date/Publication: 2026-09-16
NeedsCompilation: no
Packaged: 2026-09-16 21:58:04 UTC; biocbuild
Author: Jianhong Ou [aut, cre] (ORCID: <https://orcid.org/0000-0002-8652-2488>),
  Kenneth Poss [aut, fnd]
Maintainer: Jianhong Ou <jou@morgridge.org>
