bibentry(
  bibtype  = "Article",
  title    = "Computational reconstruction of the signalling networks surrounding implanted biomaterials from single-cell transcriptomics",
  author   = c(person("Christopher", "Cherry"),
            person("David R.", "Maestas"),
            person("Jin", "Han"),
            person("James I.", "Andorko"),
            person("Patrick", "Cahan"),
            person("Elana J.", "Fertig"),
            person("Lana X.", "Garmire"),
            person("Jennifer H.", "Elisseeff")),
  journal  = "Nature Biomedical Engineering",
  year     = 2021,
  volume   = 5,
  number   = 10,
  pages    = "1228-1238",
  doi      = "10.1038/s41551-021-00770-5"
)

bibentry(
  bibtype  = "Article",
  title    = "Differential cell signaling testing for cell-cell communication inference from single-cell data by dominoSignal",
  author   = c(person("Jacob T", "Mitchell"),
            person("Orian", "Stapleton"),
            person("Kavita", "Krishnan"),
            person("Sushma", "Nagaraj"),
            person("Dmitrijs", "Lvovs"),
            person("Christopher", "Cherry"),
            person("Amanda", "Poissonnier"),
            person("Wesley", "Horton"),
            person("Andrew", "Adey"),
            person("Varun", "Rao"),
            person("Amanda", "Huff"),
            person("Jacquelyn W", "Zimmerman"),
            person("Luciane T", "Kagohara"),
            person("Neeha", "Zaidi"),
            person("Lisa M", "Coussens"),
            person("Elizabeth M", "Jaffee"),
            person("Jennifer H", "Elisseeff"),
            person("Elana J", "Fertig")),
  journal  = "Bioinformatics",
  year     = 2026,
  volume   = 42,
  number   = 3,
  doi      = "10.1093/bioinformatics/btag089"
)

# Release year from the Bioconductor build date; current year for development installs
pkg_year <- if (is.null(meta$`Date/Publication`)) format(Sys.Date(), "%Y") else substr(meta$`Date/Publication`, 1, 4)

bibentry(
  bibtype  = "Manual",
  title    = "dominoSignal: Cell Communication Analysis for Single Cell RNA Sequencing",
  author   = c(
    person("Christopher", "Cherry", role = c("aut"), comment = c(ORCID = "0000-0002-5481-0055")),
    person("Jacob T", "Mitchell", role = c("aut"), comment = c(ORCID = "0000-0002-5370-9692")),
    person("Sushma", "Nagaraj", role = c("aut"), comment = c(ORCID = "0000-0001-5166-1309")),
    person("Kavita", "Krishnan", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-1345-0249")),
    person("Dmitrijs", "Lvovs", role = c("aut")),
    person("Elana", "Fertig", role = "ctb", comment = c(ORCID = "0000-0003-3204-342X")),
    person("Jennifer", "Elisseeff", role = "ctb", comment = c(ORCID = "0000-0002-5066-1996"))
    ),
  year     = pkg_year,
  note     = sprintf("R package version %s", meta$Version),
  url      = "https://bioconductor.org/packages/dominoSignal"
)
