1e82ed988632dee7d85a707482e38256 *DESCRIPTION
c923766318c273e441fbd4945a33a43b *LICENSE
69387407aecc6160fb2f88f31282994a *NAMESPACE
0d8d01c9c8b242119d4fe74db189c13e *NEWS.md
11a6e86a9afd888844895288cbd6a894 *R/RcppExports.R
652416b05dc984a04a63bc6a42d2d93c *R/celda_functions.R
370e13f5fe95433d4ee06945353f2740 *R/decon.R
f846b47a1daa1f1335017553887808aa *R/decontPro.R
505d5fcb2adadcc17f1f0c37f8e684cc *R/decontX-package.R
60a8913b795ebc946f7bfa98a0579c4f *R/matrixSums.R
14888cef870ed3418b4c3c98cef16f94 *R/plot_decontPro.R
2c00d606ea0de12f8e339427a2c117b9 *R/plot_decontx.R
0f703286bebd10c5e20a5f4c36810e73 *R/stan_helpers.R
bbbcd89ecf5f8ceb6377ea5fab161776 *R/stanmodels.R
5387d59625816e9f408d33401fd7fa1f *README.md
b2ed0cae330b0a490a77f58ef39088f6 *build/vignette.rds
7e297a31e37e77c201a2bacff2f979eb *configure
5fdedca26c8830d7bb06aa1c4a634204 *configure.win
3812089b429216a9a42f127548d8e830 *inst/CITATION
9f8a8492a2d0d02dc31908f21d1effa1 *inst/doc/decontPro.R
bb75e6eda1313227d9936bf5df8da256 *inst/doc/decontPro.Rmd
b3237a8080adf837cd4b8df662aa47bb *inst/doc/decontPro.html
bc09286c65d1519cc15cda2b676981bf *inst/doc/decontX.R
09451b26b4f4e18330e38574a34d3633 *inst/doc/decontX.Rmd
5d63e09e7ac47f68ef06e4b475103c5b *inst/doc/decontX.html
855c064dbf8deaff96c8dc8a87169109 *inst/include/stan_meta_header.hpp
6c07d411c9e2227a4d9613be151aeb89 *inst/stan/include/license.stan
aeabeaac0e250744bf4230fecc4860c0 *inst/stan/shrinkage.stan
47d50a79894de4c02b154997ed646488 *man/decontPro.Rd
7445963b5b65c9aebf5f88a344d3e59f *man/decontX-package.Rd
cf0e157c0b5f611ef03ac15039e2240f *man/decontX.Rd
0e56fabd84d39a9749866e1bebc72edc *man/decontXcounts.Rd
2fbd7db58447c01a93e9f6d2b864ae2b *man/dot-call_stan_vb.Rd
91ed48ab44d0e5d5fbc3373741d6c242 *man/dot-process_stan_vb_out.Rd
0dcb1c16dce6a78bc6a51bd60e3a742f *man/examples/decontX.R
ed7b81b7e94e70d6debfab3457992bbf *man/fastNormProp.Rd
97565b92527723b2af52f041cc172987 *man/fastNormPropLog.Rd
52e22793e708d8f0c2a9f8a9153a2964 *man/fastNormPropSqrt.Rd
c67ebe8a14b6c609e21dd47977d95000 *man/nonzero.Rd
8bfb7af650d49ab19381436896ded8a4 *man/plotBoxByCluster.Rd
d8072b93ce541dd90391f0a3ba1a0717 *man/plotDecontXContamination.Rd
8bd0e783e99ee9c9e58d469d645f6df9 *man/plotDecontXMarkerExpression.Rd
f813e5fdaabd16b798b682d24a8cfa0d *man/plotDecontXMarkerPercentage.Rd
7572a86566faaeeeca75ece23d060a5f *man/plotDensity.Rd
b96e139bb4f2acfd6d3bf0fa3310116b *man/retrieveFeatureIndex.Rd
b63dd72691358febaf76dfd82da8459a *man/simulateContamination.Rd
89c04f9be1e47180b379fb1dc8ad3139 *src/DecontX.cpp
564c40d0e86bb1e58d039ff240e97b9f *src/Makevars
457929755cc1db9abe969d16b0006005 *src/Makevars.win
5b7c042fd0b52b73fbac9d64227b19a5 *src/RcppExports.cpp
d15df6204d8fa03e52a2019c1bfe9e1b *src/matrixNorm.cpp
2dfab42250a62f244862c0483eff92f0 *src/matrixSums.c
ee29298e1a4275d6b0706b3feb2947e1 *src/matrixSumsSparse.cpp
21a13179af5cac0d36f5d23dbddf2100 *src/stanExports_shrinkage.cc
9f9682e1ee0a54dbaac8825bd0935f4a *src/stanExports_shrinkage.h
e2633d02a21ea06df9141e3a7dbfe460 *tests/testthat.R
6bc106b40bda1a8435fa4604fa302ae7 *tests/testthat/helper-decontx.R
02f5ddc3f09808940c1a9f7066ec1ee0 *tests/testthat/test-decon.R
b9f21861ee52502fe9073e6158aaa882 *tests/testthat/test-decontPro.R
70e0a4d13ed11eb2cf220f60c401948a *tests/testthat/test-matrixSums.R
bb75e6eda1313227d9936bf5df8da256 *vignettes/decontPro.Rmd
09451b26b4f4e18330e38574a34d3633 *vignettes/decontX.Rmd
