8d60e58106336cc96ea348615ed3778f *DESCRIPTION
6f8e16a3e13b6c4c6ae1fd898e68fa4a *NAMESPACE
ea04fb13af8dbb1df3b4d9e272a9bc17 *NEWS.md
8a8d87fdb32045daf5e82a46c406b7ef *R/DE_between_group.R
7d803c5e5e9c0436083ea83ba4ef837b *R/DE_between_time.R
e5403e1b5c63364ce686625a20b639a8 *R/TiDEomics-package.R
acdae81d9000e7ebbfcb09b81dfe7bb6 *R/WGCNA_input.R
7350736c90f05594e39ca9b9108c8d98 *R/WGCNA_module.R
bb9b3952ed5e185c24b75eed22c123ed *R/anno_multicol_textbox.R
a1553062fb8c61d58d3e4c63f75c520b *R/calc_feature_property.R
a613d88ceb5ff07d5f887769c9b927e6 *R/calc_mean_sd.R
077b1a7dce9e84c3af665a70993bafdf *R/check_inputs.R
a9f1bea0e6df23d5b9a5c630cc73744c *R/create_input.R
bdc87f5095254d82e37916a31c6ac519 *R/data.R
caf4fb07f433cbed1bf2796d4e72957e *R/decomp_variance.R
7b4834c28b4500c91e662268fb93be37 *R/enrichGO_list.R
667881af7df92e49190a2f18fb1d4b09 *R/enrichGO_rank.R
be6c90780009de1e68029b97dc761395 *R/enrichR_list.R
b7fd0bbe199ab95ec89f7285a91cb2ed *R/enrich_msigdb.R
4de0af1e2ae794709afa02bf000808f3 *R/enrich_utils.R
3d19577b67662a50742ed42a35f50ece *R/extract_hubs.R
605b635ec7d8bc2dd891491efe476d0f *R/extract_segment_trends.R
84140cb8acb4ac3823f43e10f307699c *R/flatten_DE.R
2044357f68d8e3e5802e748d9fc3c992 *R/flatten_enrich.R
ae667ecc5ce4385cf7cc765357d738a4 *R/global.R
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5bc4c3a47cdf4874c862d7129317f28a *R/impute_groups.R
6324c88e011efdd5b81adf730765ea76 *R/merge_groups.R
459344b8fddd2eefe59933a1050b9a63 *R/merge_replicates.R
959b6cd594a171ffe277b3009b473d72 *R/normalise_to_start.R
5843f5fc6fee99ccde40ab59a5781a47 *R/palette.R
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14ce8b85d73242e343900a6723f41afc *R/plot_DE_between_time.R
24eb32541e789b136a4d3fd05404869f *R/plot_GO.R
a2f5b3f07d8b0bbe0b42e308aa0a4c91 *R/plot_ID.R
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7751438fd26842f171cec99faf98976c *R/plot_breakpoints.R
fbab4bc8552f7e470c3788cfb35ec5f9 *R/plot_cor_matrix.R
5bab91c029ad4e2de91dd317b5a80317 *R/plot_cv.R
247b2de17d7c3f1f7e144458f16de859 *R/plot_distribution.R
8f1befcd805586349aeab3538987e70a *R/plot_missing.R
3c740d1d15f2c83639d2e51e83b0a2d1 *R/plot_modules_h.R
114c0879575983d361227c7367cd3fa8 *R/plot_modules_input.R
9fc37386ba4098417ec9d9bbe77b97f5 *R/plot_modules_v.R
d7e1b2ad296d65dfaa588ee8f16bcbfc *R/plot_pca.R
f0bc9de11ea8402491a073bbe776f838 *R/plot_pca_3D.R
eb8d13135a6397b1f86792bae698ab89 *R/plot_pca_by_group.R
964e28bc3fbf5fd14b04fcad11507426 *R/plot_segments.R
cee9acf1ea60a1589533044c2ab8020a *R/plot_trend.R
edc338378187ea08492cb117b3661f6e *R/plot_umap.R
df35f572ed294702969a896fff0f9a6d *R/plot_umap_by_group.R
858a3923ad01d8e9828764346273b292 *R/plot_variance.R
2d84ed8581c7764639a313d2f5bd9e70 *R/plot_volcano.R
04411373d318c70e058e543ffae341eb *R/prepare_WGCNA.R
f77573e0f6260da6939de2ac123a917b *R/prepare_tide.R
b3abe0fdf572c9a911c0ed298fa851e3 *R/run_Trendy.R
1d3ece89e03331921d1dd6f3d99deba3 *R/run_WGCNA.R
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2e49ac3284ba1c4b78e1fb59b2a7dc15 *R/summarise_Trendy.R
fd18908c369f84999aa3213269430afc *R/summarise_feature_property.R
f6a7fcb539f2ef752feda8e76baaedda *R/summarise_module_metrics.R
b830002fe59b4dfa951f2c6400afc971 *R/summarise_module_pattern.R
1952a13f3aee45f590688257fbaba6af *README.md
81acdcf83b5b1384bae5402991c22d0d *build/vignette.rds
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9fc9a2181cdeb04c2c5117f0b887d339 *man/prepare_WGCNA.Rd
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655711d8d6835691b611b209d6567943 *vignettes/TiDEomics.Rmd
3c39445930d63a4b8a3aeb5349fb096b *vignettes/references.bib
