59b2de383ee369218c91ff26a77bf21e *DESCRIPTION
85b042d501d860c1926c7a69e644c767 *LICENSE
02ed6751de3b374b36f6cd8c6232c7aa *NAMESPACE
120509026b511a4f7cec9c48e842b15b *NEWS
a3e3380e96912a80a016e2f837a94170 *R/analyse_sc_clusters.R
e931d3ee7f9aa6e1b3ae1f6686e7ba11 *R/analysis_request.R
b8d1b2517b783f1ef2594277b9878bbd *R/analysis_result.R
c916d3a625c5ac4235b660b7b6dbe508 *R/generate_metadata.R
ee318340efbbe590388103d5969a70d4 *R/generate_pseudo_bulk_data.R
0e6b01a396b47036ca4e8ab15b3b5128 *R/get_methods.R
de6d36549cee44bbc445b9bad48a1eb6 *R/get_result.R
e205ff0d5fc7888ccc97d5773b87760a *R/gsva_plotting_functions.R
21e5d2dd619ce8c40cbc649362c7c18b *R/on_load.R
a39269e930d435fdb49779ff6af05e82 *R/perform_analysis.R
ae16f056973e2036c7bcc50203e78a1b *R/plotting_functions.R
58bb61ffa6aadddde420d0190c1717fd *R/public_data.R
43b739518d4613d7a94fffea1a1988e5 *R/send_request.R
4361e09b5499cca0fa69f796850f996e *R/utils.R
2d21fc1b6fdca13ac76cb6cb3d45ec71 *README.md
bdff902c318a99c87e2086d4b0e9971a *build/vignette.rds
248b49857f7e34fd593f916662f1ab12 *inst/CITATION
6ed2aa17778a67289a56d16693537eff *inst/doc/analysing-scRNAseq.R
a2595dd30f59c3aeec31d44009d6c9e2 *inst/doc/analysing-scRNAseq.Rmd
a213397fa1e2146780fa00a3672f12a4 *inst/doc/analysing-scRNAseq.html
132931d9fbf1dbc2a76c369313b3d5ab *inst/doc/reanalysing-public-data.R
44d86ac2e2539a75d18ebcb7d0a44922 *inst/doc/reanalysing-public-data.Rmd
ac5bb5ed5b3ba081353074f6cf982408 *inst/doc/reanalysing-public-data.html
841b511b7fdae9c2f383a11e544304b6 *inst/doc/using-reactomegsa.R
222857b214dea5dda4cbf40b0ee5d573 *inst/doc/using-reactomegsa.Rmd
9e1e96fd9ec5e6fe5d35cc19b8d86528 *inst/doc/using-reactomegsa.html
3322343b8cdc802e85a837aa975b6b48 *man/ReactomeAnalysisRequest.Rd
4ae9832d6d179dfa1d7a214acc058252 *man/ReactomeAnalysisResult-class.Rd
f5fe5c581424b1a3d44d0d91ae18910c *man/add_dataset-ReactomeAnalysisRequest-DGEList-method.Rd
fdf3a97aef06966a41d52f6b5c7d8971 *man/add_dataset-ReactomeAnalysisRequest-EList-method.Rd
f72a55b5239bbe6b9188e7b17758a32a *man/add_dataset-ReactomeAnalysisRequest-ExpressionSet-method.Rd
e271012e56da2a3bc4e1ded2ca69f609 *man/add_dataset-ReactomeAnalysisRequest-data.frame-method.Rd
dfc4bc8de8e02b5ee8a947c748c42210 *man/add_dataset-ReactomeAnalysisRequest-matrix-method.Rd
32a23141eb3515d1c4401374b0954bfe *man/add_dataset.Rd
c7fcca74cff759555232f3c2f95439c6 *man/analyse_sc_clusters-Seurat-method.Rd
f55eb8efe3c347df5437e32f3ec5148a *man/analyse_sc_clusters-SingleCellExperiment-method.Rd
d2051cef071054eab13675cb04996bd7 *man/analyse_sc_clusters.Rd
843cfc90df2046d0ddf994b1e5a018f3 *man/break_names.Rd
0abb9cdad28b472a3d7245fd0924ad85 *man/checkRequestValidity.Rd
046bffbd2f95524e849460de28166f90 *man/check_reactome_url.Rd
e09fe5955503aab83ae4c332b08fd81b *man/convert_reactome_result.Rd
5db385a738f85d2b2180dfd02c01b7eb *man/data_frame_as_string.Rd
a75ae36e96d090653ed162cbc5ecd467 *man/fetch_public_data.Rd
8d9fa9733f7af741626cd360b75ad5fb *man/find_public_datasets.Rd
c0731fe279c9c3e1845a4a5c6d6f1ad5 *man/generate_metadata-data.frame-method.Rd
b4d57cc8a34dc64928b42c9a2eda562e *man/generate_metadata.Rd
dcb9c992de8f756b2f24b7045c862884 *man/generate_pseudo_bulk_data-Seurat-method.Rd
444f95842a633880677daf4a1e2b9bca *man/generate_pseudo_bulk_data-SingleCellExperiment-method.Rd
474a5f9df74836832dbd7c76c46a93d0 *man/generate_pseudo_bulk_data.Rd
34e40e22a09c58b4b0c8c671474fd7df *man/get_dataset_loading_status.Rd
e3559e8d05efbbdb2637ed6bbac4ded6 *man/get_fc_for_dataset.Rd
2d90930422b04a08048947b37ff0977a *man/get_is_sig_dataset.Rd
14810b356f37eab46214caec270c7d84 *man/get_public_species.Rd
1960d46584c69dfa61bedbe3de7c1adf *man/get_reactome_analysis_result.Rd
ba070a158e90f8f0c985b88cd150e78b *man/get_reactome_analysis_status.Rd
a84abf6871be1fa6c65b710044b982ad *man/get_reactome_data_types.Rd
dbb59750505b019bde36930f3c9fe517 *man/get_reactome_methods.Rd
3452999010cd30138e49f491215f156a *man/get_result-ReactomeAnalysisResult-method.Rd
c64e9eab5bd3e4ce8e9651e464e0c6a0 *man/get_result.Rd
b82fcaf6884769c1c385de2740794ab7 *man/is_gsva_result.Rd
06458b59b7edbf5e958483b8365a9bf4 *man/load_public_dataset.Rd
f6ab75a77b5976baa1df4a9a7ff859ac *man/names-ReactomeAnalysisResult-method.Rd
c72901a36372adf52af6667334bf65e7 *man/open_reactome-ReactomeAnalysisResult-method.Rd
3416f77d7571af235f4b1ffbc6c203d8 *man/open_reactome.Rd
62f106ea837c3e43176b721b61e30cbf *man/pathways-ReactomeAnalysisResult-method.Rd
bc3e1243a9e30d558e72888a1d5e1723 *man/pathways.Rd
4c864df57cc2174d43d3f74f35009a5c *man/perform_reactome_analysis.Rd
b8edf27478388a057140d0519d9cf817 *man/plot_correlations-ReactomeAnalysisResult-method.Rd
88ae50d55973f0f141b7da568e2f762c *man/plot_correlations.Rd
7bba1604a53c24c895e799782ac029e9 *man/plot_gsva_heatmap-ReactomeAnalysisResult-method.Rd
b340fa6392f59c2867ced191af2ef160 *man/plot_gsva_heatmap.Rd
a1554c7ece7f2138bb32ac0f09297724 *man/plot_gsva_pathway-ReactomeAnalysisResult-method.Rd
044d2be6c569a569c1f0c848a74e3149 *man/plot_gsva_pathway.Rd
35f7d3364a31f41ecc0b945679690013 *man/plot_gsva_pca-ReactomeAnalysisResult-method.Rd
ec4b46c9cf74e2189824040cc4e48bda *man/plot_gsva_pca.Rd
b2343ce5f27b4f7449a6ceaa021ff65f *man/plot_heatmap-ReactomeAnalysisResult-method.Rd
fef25dd348c43c825214f6cbd10a2d0e *man/plot_heatmap.Rd
acc08ee3187ea2ca5bdae10a06bea1ea *man/plot_volcano-ReactomeAnalysisResult-method.Rd
bf209ff9b3fb99b8322dc389d634a50c *man/plot_volcano.Rd
b459bcce661dece73990d3dde5fe539b *man/print-ReactomeAnalysisRequest-method.Rd
1f30319027d9f24d8f265552bba3fd3c *man/print-ReactomeAnalysisResult-method.Rd
109ad0b4ed5e2739113dadd618ad183d *man/reactome_links-ReactomeAnalysisResult-method.Rd
a73383fb57805188f3b4bb46dc2184fd *man/reactome_links.Rd
0d6a8ff173abc38761228ff087ff530d *man/remove_dataset-ReactomeAnalysisRequest-method.Rd
cba81c467b1710c41c78954bf6803d43 *man/remove_dataset.Rd
01ce995af842b0ab6e44f55fc9be01e8 *man/result_types-ReactomeAnalysisResult-method.Rd
4f222ddc23ee764d05d3b284ea95233c *man/result_types.Rd
5d4edf71e0b7bf44264b4115895e3b6d *man/set_method-ReactomeAnalysisRequest-method.Rd
1b76a89c660faa2fda5743625ae96b36 *man/set_method.Rd
c89cd4d920243944e5b480a82e942457 *man/set_parameters-ReactomeAnalysisRequest-method.Rd
4c4acfa156d85af2512279f1468abe2f *man/set_parameters.Rd
a5b8bc27d8dfc31315412f5e6b2ec52e *man/show-ReactomeAnalysisRequest-method.Rd
231a9dd7426e9aa660e1c568c27fa686 *man/show-ReactomeAnalysisResult-method.Rd
161c1be5425a8cda02a74ac719a8b994 *man/split_clustering.Rd
2e6fd72e33f6ed7ec6e9e233835f0dcf *man/split_random_sce.Rd
3cfd56c5ac884ffdb22c1c65cec5dc55 *man/split_subclustering_sce.Rd
feadb0d3a72f9be5ada3d1b7007fcf9e *man/split_variable.Rd
5989b11f718385dfbf65217db4fa1308 *man/split_variable_random.Rd
9cb23bf934c8a241d53730f1f0353037 *man/split_variable_sce.Rd
29060abd99ec84c94a29e0e80473fa7c *man/start_reactome_analysis.Rd
d7e847eac3951fa168f1042094c00e2b *man/wait_for_loading_dataset.Rd
93ce4d27fc8ef4f934ce72b06685c038 *tests/testthat.R
6a833b5026d80a718daf3fc5186b5fb2 *tests/testthat/test_analysis_request.R
a2595dd30f59c3aeec31d44009d6c9e2 *vignettes/analysing-scRNAseq.Rmd
44d86ac2e2539a75d18ebcb7d0a44922 *vignettes/reanalysing-public-data.Rmd
222857b214dea5dda4cbf40b0ee5d573 *vignettes/using-reactomegsa.Rmd
