db2eab81038f023ead7b98be92b31668 *DESCRIPTION
764d8e4dd58ae03943a6a9632657801b *NAMESPACE
2b3f1b464902a467a3c3c49139759a75 *NEWS.md
d73807f3d0d203799f25d9f9c0dd2ce5 *R/RJMCMCNucleosomes.R
7955fffc81dc820b8d3e1a0167b7609c *R/RcppExports.R
19d838c321e1df5ed3119c4a98747fca *R/print.rjmcmcNucleosomes.R
255e09f9dd7a5a7b75f53745f06fbd52 *R/print.rjmcmcNucleosomesBeforeAndAfterPostTreatment.R
08e76f747acda0bb3a36ede49fcc9d9e *R/print.rjmcmcNucleosomesMerge.R
06948909a22e059a6ccfe6605aa580f6 *R/rjmcmcMethod.R
a381070831f648aa68c4f2b8ded6e38a *R/rjmcmcMethodsIntern.R
25d6ed8797553908556f2c279b210c96 *README.md
9e549a19e42f960d65d0461537ba1b48 *build/vignette.rds
fae30b9690c47d99abbeacbfbe40d1df *data/RJMCMC_result.RData
c0db264f1e3ac15b81971c2220db6ccb *data/reads_demo_01.RData
5110337caa4f2621f1f2aa38f327f07b *data/reads_demo_02.RData
3866a47f4642470b238ce675967a0ce5 *data/syntheticNucleosomeReads.RData
763b941f027dc96d2517494910ca07b5 *inst/CITATION
f4f8ff9c665e683618c574d4b5a4318d *inst/doc/RJMCMCNucleosomes.R
bf4a621a4f192b6007fee760f0d01c27 *inst/doc/RJMCMCNucleosomes.Rmd
f915b01a0a06394861c94b75a2522898 *inst/doc/RJMCMCNucleosomes.html
f732a0b98636e4a79a482330ca9f282b *inst/extdata/RJMCMC_seg_01.RDS
4c0a60242e3f4ba32318e3d87c63a7bc *inst/extdata/RJMCMC_seg_02.RDS
bdfbd47d1c08bf2b6c6b0d1e96312eba *inst/extdata/RJMCMC_seg_03.RDS
4a105dac3db012479c811635d3196381 *inst/extdata/demo_vignette/segmentResult_1.rds
908f901deea7afca82f8bb355243194e *inst/extdata/demo_vignette/segmentResult_10.rds
2eff1999e494b2fbaa1a8b11ff63eb71 *inst/extdata/demo_vignette/segmentResult_11.rds
847be61c130d0754a26303bdd2a85673 *inst/extdata/demo_vignette/segmentResult_2.rds
16277f7a33555df0991504239d4285de *inst/extdata/demo_vignette/segmentResult_3.rds
e908c9667a6f40c1cb2dfa5a141cd3d0 *inst/extdata/demo_vignette/segmentResult_4.rds
55d655a0756020bbcd1def6f9bf02786 *inst/extdata/demo_vignette/segmentResult_5.rds
b1e1d29db4a77d146b311f42bfaf4f63 *inst/extdata/demo_vignette/segmentResult_6.rds
3e082567de78455ff94608c6d6e85580 *inst/extdata/demo_vignette/segmentResult_7.rds
d02bf9041df2acf8ffc8f3b0fc70cea1 *inst/extdata/demo_vignette/segmentResult_8.rds
524cf200ee9551c9a72622c1c67d2e47 *inst/extdata/demo_vignette/segmentResult_9.rds
5a40998432e2d4bcd90db0a0b9035fc0 *inst/unitTests/test_print_rjmcmcNucleosomes.R
ae54641f9d31c272e514505974b3066e *inst/unitTests/test_print_rjmcmcNucleosomesBeforeAndAfterPostTreatment.R
75e12aa491f06046556204bd60ccbc61 *inst/unitTests/test_print_rjmcmcNucleosomesMerge.R
8b076464dda01631cca38c4e9e2a6c5f *inst/unitTests/test_rjmcmcMethod.R
7210e1a0bf4f4b2d3356dc8c22a1ce3e *inst/unitTests/test_rjmcmcMethodsIntern.R
089e7206c7850358e60d0aa02b4d788a *man/RJMCMCNucleosomes-package.Rd
e9d7e6371fbbb8cd974bf41e9637a94e *man/RJMCMC_result.Rd
17d9e4432629d5aa3ff45684008347b9 *man/mergeAllRDSFiles.Rd
dc4433224fb841da74708ebb9f819b71 *man/mergeAllRDSFilesFromDirectory.Rd
6d3b86ffa691acccbf00967bfaa8eae5 *man/mergeRDSFiles.Rd
8da4cea18ee321523e708ff852082ee8 *man/plotNucleosomes.Rd
968895669f276b715f3cdff18949b132 *man/postMerge.Rd
6b32c541ebcd11a9b89d11b663fd8d0a *man/postTreatment.Rd
936f344232b1a0135d1e34373cce9255 *man/print.rjmcmcNucleosomes.Rd
89fa21d4d6d42f7c4af601efab0923bd *man/print.rjmcmcNucleosomesBeforeAndAfterPostTreatment.Rd
f26f531d8622cfde58a0a89ed8d30018 *man/print.rjmcmcNucleosomesMerge.Rd
07ad7383bcc1b456cdff1965b8283dfa *man/reads_demo_01.Rd
df766f5ce1916d059927473534fee45e *man/reads_demo_02.Rd
6b024d55fb515d2dcd287096c12a44d9 *man/rjmcmc.Rd
3a9dd03c01dbb0a5100fd3f8dc751b6e *man/rjmcmcCHR.Rd
3aeaa893c51c32b4946ac14ceb58d2f6 *man/rjmcmcNucleo.Rd
fa0cc5ee8940d107f2c45f0e4bb81d57 *man/runCHR.Rd
c2b51b099ff8a7f5410c415930591dad *man/segmentation.Rd
6cf261a5a8e4ae7b8189c662f2bcc04b *man/syntheticNucleosomeReads.Rd
184f291556decf388203674dd5865140 *man/validateDirectoryParameters.Rd
76eec7cdda4303a94fc281a9199d70a2 *man/validatePlotNucleosomesParameters.Rd
d7ea5ef374187fa4c2263ba37432edad *man/validatePrepMergeParameters.Rd
9dd56c21c21e8c6292fb32752bac8bf2 *man/validateRDSFilesParameters.Rd
6f0ea808b16999ae667a9ebb23b78f77 *man/validateRJMCMCParameters.Rd
43d478112c976c5820bb78e8e8797a78 *man/validateSegmentationParameters.Rd
e4c58865d877d2c68a783d1bb38c6818 *src/Makevars
deff16f9a34ce02eadcb42794e1c631f *src/Makevars.win
db28a78180fef04dddfc29e241db541a *src/NucleoDirichlet.cpp
24c955eda986550a406010bdc941d767 *src/NucleoDirichlet.h
5087b760fa920595a824d36cf3fa7d09 *src/NucleoDirichletPA.cpp
fb9797ad8173356cd52e6fee384e9f95 *src/NucleoDirichletPA.h
9f50e97baf227b5c6c0b58932b4c5fb9 *src/Nucleosome.cpp
bf98027bafa0c7bed7bbb4ff5173ea31 *src/Nucleosome.h
58397b89e357111d2ec8134639cd5fc6 *src/PartitionAll.h
e5ce9280c8cb2df39710d90f6a5a506c *src/RcppExports.cpp
47ce2b5eb5db918550c7987d1d3973d1 *src/SegmentSeq.cpp
c39501aec521353fa8c8e5f8d40e47bd *src/SegmentSeq.h
b493a20e99a1e749a08016346bec37ac *src/SimulationNucleo.h
d31c02a51d2ea4f63d6ce21c8191eeb6 *src/SimulationNucleoD.h
50e800cbc19ebddf2c241f9459162b9e *src/SpaceNucleosome.h
18173e8fb91690608e8e01ac3636522a *src/SpaceNucleosomeD.h
c2eab7b318458a183dedddcd7b9644c6 *src/rjmcmcNucleo.cpp
c86d65752b1fa90b33b3f6677ecaf99a *tests/runTests.R
bf4a621a4f192b6007fee760f0d01c27 *vignettes/RJMCMCNucleosomes.Rmd
06a1298cc63f65826bf32614c8607c36 *vignettes/rjmcmc.bibtex
