# Generated by roxygen2: do not edit by hand

export("neighbourSlopes<-")
export("topDrivers<-")
export("varianceDecomposition<-")
export(ambientField)
export(anchorGenes)
export(buildNeighbourhood)
export(cellContamination)
export(cellTypes)
export(compactFit)
export(fitState)
export(neighbourSlopes)
export(paceDecompose)
export(paceDrivers)
export(paceFit)
export(paceModel)
export(paceModelGaussian)
export(paceParams)
export(paceShrink)
export(pairVariance)
export(plotDecomposition)
export(plotDrivers)
export(plotPairHeatmap)
export(plotProximity)
export(plotResponseCurve)
export(plotResponseMap)
export(stashPACE)
export(topDrivers)
export(varianceDecomposition)
exportClasses(PACEFit)
exportMethods("neighbourSlopes<-")
exportMethods("topDrivers<-")
exportMethods("varianceDecomposition<-")
exportMethods(ambientField)
exportMethods(buildNeighbourhood)
exportMethods(cellContamination)
exportMethods(cellTypes)
exportMethods(fitState)
exportMethods(neighbourSlopes)
exportMethods(paceDecompose)
exportMethods(paceDrivers)
exportMethods(paceFit)
exportMethods(paceModel)
exportMethods(paceModelGaussian)
exportMethods(paceParams)
exportMethods(paceShrink)
exportMethods(pairVariance)
exportMethods(show)
exportMethods(topDrivers)
exportMethods(varianceDecomposition)
import(dplyr)
import(ggplot2)
import(methods)
import(tibble)
importFrom(Matrix,Matrix)
importFrom(Matrix,bdiag)
importFrom(Matrix,colSums)
importFrom(Matrix,rowSums)
importFrom(Matrix,sparseMatrix)
importFrom(Rcpp,evalCpp)
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,metadata)
importFrom(SpatialExperiment,spatialCoords)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,colData)
importFrom(ashr,get_lfsr)
importFrom(ashr,get_pm)
importFrom(ashr,get_psd)
importFrom(dbscan,frNN)
importFrom(mashr,cov_canonical)
importFrom(mashr,cov_ed)
importFrom(mashr,cov_pca)
importFrom(mashr,estimate_null_correlation_simple)
importFrom(mashr,get_significant_results)
importFrom(mashr,mash)
importFrom(mashr,mash_set_data)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,show)
importFrom(methods,validObject)
importFrom(stats,as.formula)
importFrom(stats,coef)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,optimize)
importFrom(stats,pnorm)
importFrom(stats,predict)
importFrom(stats,qnorm)
importFrom(stats,quantile)
importFrom(stats,rnorm)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,var)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,pivot_wider)
useDynLib(PACE, .registration = TRUE)
