8d31ed6c6790c0094b926a9a15b005e0 *DESCRIPTION
6305a4d9b6362258084a61b322c2d50a *NAMESPACE
65f1913696c96d4b8b6f93792f3b4fec *NEWS.md
b4fcb5b5176b9a14b3147b1075db9c32 *R/AllClasses.R
20c36126b40cc855d99f048a2fee6157 *R/AllGenerics.R
57c6ee8aecf1213c079763efae0462f9 *R/PACE-package.R
7ac1623160777bc52bcced939d7951a3 *R/RcppExports.R
51c432e7a6b95b592a8d1ad60a67351d *R/anchors.R
71427bef67fd34c24af7f5b6c750ee26 *R/engine-abundance.R
0f77778c76fe6171dcadf79b60b154e7 *R/engine-decomp.R
5216fa898626ad8300d24c986375f20e *R/engine-extract.R
6639cdfa70f3129081a9135f24d70dd9 *R/engine-mashr.R
f3be6733051b2846c817a9630267de95 *R/engine-mvpql-joint.R
4b131a0d67fbff8775cc025f69691c0a *R/engine-mvpql.R
8e7430e21e81b20a76e5364993d336ca *R/engine-streaming.R
c85000477e723b0a49075408ee91979a *R/methods-PACEFit.R
00af1f508716accd9c0e91caa88905a2 *R/pace-core-gaussian.R
30a6de0a2eb6d5e1777a33796e21e02e *R/pace-core.R
282c1c9b8e05a530870a87e09e4a8f65 *R/pace-stats.R
20d2ed3ebd9868dda1556f02f526fa15 *R/paceFit.R
f0b3de4d406b5e5afe1393eaa1686447 *R/plots.R
16eb57b7b5bb0125fdab629bebbf7deb *R/stash.R
266a11aad7e43676b85a656717e65fc6 *README.md
8239cea78ad6c4723a822d403f637ee4 *build/vignette.rds
666afe5f1c88744fa32e750fdb5a6b1a *cleanup
6842171a203cdc4e80f51a5e0a6822a2 *configure
a960aabda522eb36037a9799c05d5e7d *configure.win
556caa80a668ec1ca90a05d276667f6d *inst/doc/PACE.R
155e4e826becc794b9cf533324f29445 *inst/doc/PACE.Rmd
1de5af86b7d6d9fe92f7e5a281aeae61 *inst/doc/PACE.html
6b0bcbe45ef2c45ad33362c6e9202b53 *inst/doc/condition.R
77f931a93fd74935127e03d85ec52668 *inst/doc/condition.Rmd
191468c73de82342973022909c0f57b1 *inst/doc/condition.html
4be6d5e77afe059ac9cdf2601084b856 *inst/extdata/bc_xenium_subset.rds
1a8491ffe907416d4960f3c394a6fd00 *inst/extdata/mel_cosmx_subset.rds
d7f35e66fbebabe61572ee9fbe44591c *inst/extdata/pace_fit_example.rds
222461c49a9f7df023fbb64ff59196ba *inst/scripts/make-mel-cosmx-subset.R
c0fcc0d6cf59b3fa96b1fabf589861ad *inst/scripts/make-pace-fit-example.R
e5160537dda0539c6a86ba1f0dbadcdf *man/PACE-package.Rd
c346d482176edff5a90920694849a0cf *man/PACEFit-class.Rd
90d5326c9a3ae29189981c73fdf6c72b *man/ambientField.Rd
b9415fd7ca216f9e214384348035a5cf *man/anchorGenes.Rd
fed569ba419a8bd140c8d5677779daa7 *man/buildNeighbourhood.Rd
f09650898b318034cff8503be532057d *man/cellContamination.Rd
41afb579713fe86b60e8e847f8e22c5e *man/cellTypes.Rd
53db720cb431d381ba6639f795dc6e00 *man/compactFit.Rd
e53d59f58d772916477f26e647ad9dae *man/figures/logo.png
4c86ccff4c1121d5e3123eff872a8095 *man/figures/pace_overview.png
4fca32e67d1ce4898a6c555778a772e4 *man/fitState.Rd
e2f03fa952ba81972c8fe13906496234 *man/neighbourSlopes.Rd
98001dc4e66c52d711141e2f56ad19cc *man/paceDecompose.Rd
5e7a1dbb2e18445b615f6ff033578e0e *man/paceDrivers.Rd
a339b68c81d051bf24b307cceb5c09aa *man/paceFit.Rd
b67d1721b7b6c6435cac5c5f97f02f03 *man/paceModel.Rd
8f4929857b8930021beb0d25a9a572c3 *man/paceModelGaussian.Rd
04458e7f027c92a2eea7bafd61eef3cd *man/paceParams.Rd
19cfbb07471a294c50fdde98000613ef *man/paceShrink.Rd
43c83ab8d07291b87549c0756d4d5582 *man/pace_fit_streaming_gaussian.Rd
e51466f58bb60aa1fabfe201c84dd759 *man/pairVariance.Rd
69ae6ef0b909d3d128cb408e1e9cf97a *man/plotDecomposition.Rd
9135fd60474a6effe75cb1b492536235 *man/plotDrivers.Rd
1b0cc4caa3e1dc019715eb47946b05d6 *man/plotPairHeatmap.Rd
cb92a8a854c609df9a38cfc5205de915 *man/plotProximity.Rd
739ab6751c930c665b9230895c5da3d1 *man/plotResponseCurve.Rd
7d16d6ba4a2e49fc76d74b8ad5518fec *man/plotResponseMap.Rd
858daa7f7cab03e1d67c135d782927b1 *man/stashPACE.Rd
0c8ecf225611e558c29cea8d33f04393 *man/topDrivers.Rd
03275fba291b7135e2eac245d1a8fa1c *man/varianceDecomposition.Rd
af99c29b2a78e79e22d2282301688337 *src/Makevars.in
9d43fbefded4714060da02b0acb1df27 *src/Makevars.win.in
d69ca9b4d744f165d1c6c235e1b61adb *src/RcppExports.cpp
695779b8e1a7205a2bbeba24b49880bf *src/bindings.cpp
32e45e63bbcf9189b192de2d3daf87bf *src/bindings_random_design.cpp
a0878aaa0e3d0e5bce8522cc95deae4d *src/core/core_types.hpp
4ff441856c34aa439c33622e3d541214 *src/core/count_stats.cpp
1e8dcffd8435edbdd480abb4c25996be *src/core/count_stats.hpp
de37b9d3d9dda9f8a3aa83d853fb9ac9 *src/core/decomposition.cpp
04bbe94664209b5b9446b5f2c5af7bef *src/core/decomposition.hpp
706fbc86022459b6f379bee834241270 *src/core/dispersion.cpp
22d7c9e60baf3e94738f24aea98f54ea *src/core/dispersion.hpp
3f7cf0d9c469e0877a0f979adbb2133f *src/core/fp_no_contract.hpp
244694220010b8c22a0651d58be70447 *src/core/gene_solve.cpp
3c8dee9680bb263a2c9b8a80e1f8b656 *src/core/gene_solve.hpp
61c7fc9f8cc4a06091ae9ae5c3461015 *src/core/hyperparameters.cpp
90dee2aafeae36c8c79b1f0be974079a *src/core/hyperparameters.hpp
2d965200c8286201cac63ebdc520ca78 *src/core/irls_chunk.cpp
2e2851da93fe8e87399cd4dc119b05e3 *src/core/irls_chunk.hpp
b6be0b47173b464925782733e80a34d3 *src/core/irls_driver.cpp
a691b142e2a80b31b4464c436b9299c4 *src/core/irls_driver.hpp
69559d0d1007c458e64ccffa8735bf0c *src/core/linear_predictor.cpp
275a7571330841c79078db60370d1715 *src/core/linear_predictor.hpp
db7941509d2ae65984c3101de4f7181d *src/core/mash.cpp
1a9c51bb930e3d68bf31fe92dd8fbb59 *src/core/mash.hpp
169371e169fa084a95d8559bd82b2324 *src/core/neighbourhood.cpp
3542b79d76301414bf898a8fe8c9fef1 *src/core/neighbourhood.hpp
fccb4777501be1aef49981f0637c5661 *src/core/preprocess.cpp
8afe3d7406a022dbbd248ad5985d5f8e *src/core/preprocess.hpp
18fd6a22d9d286e58982c74b1da6658d *src/core/r_summaries.hpp
f8fd97f161814c401bcf3f2921155900 *src/core/random_design.cpp
ff6f852c5f43543f23cc14e67c37fda6 *src/core/random_design.hpp
8dbf80c1606ce4551ac9bac2c6c4f704 *src/core/sparse_product.cpp
f16af81db89bc96a0c556a11bad9c809 *src/core/sparse_product.hpp
49c06cd5810efa8024aec53c5cb133b9 *src/core/spatial_grid.hpp
35ce0a5abe1a6f70b6ab663c66e9beaf *src/core/special.cpp
25f1c7f14f85daaad5eeda1e2f87df2a *src/core/special.hpp
eef661a49943815481d98b6901ee62a1 *src/core/stage_timer.cpp
287d27d0cdc6df6bb824ed735136186f *src/core/stage_timer.hpp
b2dd64a3272e404c977ff7cb35db1c00 *src/core/statistics.cpp
f8012343e665894cb5d1229e6b11f50d *src/core/statistics.hpp
6323e791e859b68b1a27cdae6ad2ebf5 *src/core/thread_pool.cpp
b4021b74c7699f636e817beeefc0b17a *src/core/thread_pool.hpp
b335ef123997b617d302e9e14b3681bc *tests/testthat.R
df34e8f5f031abd8b56d7bbaba694609 *tests/testthat/helper-bitexact.R
4941d03ae1c6269916362f449f9ee07f *tests/testthat/helper-decomposition-reference.R
a38be5fef5348fd714ff65aff0069c67 *tests/testthat/helper-irls-driver.R
f0cc30a44b25779d06318bea5680b310 *tests/testthat/helper-neighbourhood-reference.R
e7b8e162613b44f8d04938fd42ce5152 *tests/testthat/irls-driver-reference.rds
e4de190e3c591d1f55ee122aea9dc305 *tests/testthat/test-audit-regressions.R
f3fa67cbb9aceb811d8ef4c38df00fb2 *tests/testthat/test-cellContamination.R
3fe1ed699db9b7ca2a6dd20c72fc32bc *tests/testthat/test-class-accessors.R
257a4f4099121154c5cb8ce20bed5b31 *tests/testthat/test-decomposition-stats.R
3ce8585c048c445d9ca18d76a91abcdb *tests/testthat/test-dispersion-preprocess.R
7a04ae45a16ab61c907ff28466c18e3a *tests/testthat/test-gene-solve.R
f7c2862c3c0482490103b21088b5aae1 *tests/testthat/test-image-re.R
8df627f18a1015585d3720e94e42ca43 *tests/testthat/test-irls-driver.R
7a7ae42e427a8570421851f59ea3f52a *tests/testthat/test-linear-predictor.R
9b0c6c8e2f0d27f94b7385698b998119 *tests/testthat/test-neighbourhood-core.R
dfbc43106b2504e69cf9a9c7694c6749 *tests/testthat/test-pace-mu.R
e95df1aab22adb9c662085f01bd63637 *tests/testthat/test-paceFit.R
cbb7bc6e8bb725d8d2ae8d7b6b6dd449 *tests/testthat/test-plot-response-curve.R
ac942c9bb549e380688ab3f5f337556e *tests/testthat/test-realdata.R
d9c430ceac8babc3964836fbd11d7933 *tests/testthat/test-special.R
5db53244596fcb158735d9c3e4d89794 *tests/testthat/test-stash.R
155e4e826becc794b9cf533324f29445 *vignettes/PACE.Rmd
77f931a93fd74935127e03d85ec52668 *vignettes/condition.Rmd
