# Generated by roxygen2: do not edit by hand

S3method(print,topicHierarchy)
export(annotateProteinInfoFromIndra)
export(backend_capabilities)
export(bootstrapTopicModels)
export(compareTopicModels)
export(convert_ids)
export(cytoscapeNetwork)
export(cytoscapeNetworkOutput)
export(decomposeSubnetworkByTopic)
export(decomposeSubnetworkIntoHierarchicalTopics)
export(deleteEdgeFromNetwork)
export(exportNetworkToHTML)
export(filterSubnetworkByContext)
export(filter_by_curation)
export(getSubnetworkFromIndra)
export(get_curations)
export(get_entity_properties)
export(get_evidence)
export(get_network)
export(indra_backend)
export(prepare_entities)
export(previewNetworkInBrowser)
export(renderCytoscapeNetwork)
export(select_entities)
export(subnetwork_query)
export(validate_network)
exportClasses(IndraBackend)
exportClasses(NetworkBackend)
exportClasses(NetworkQuery)
exportClasses(SubnetworkQuery)
exportMethods(backend_capabilities)
exportMethods(convert_ids)
exportMethods(get_curations)
exportMethods(get_entity_properties)
exportMethods(get_evidence)
exportMethods(get_network)
importFrom(grDevices,
  colorRamp,
  rgb
)
importFrom(htmlwidgets,
  createWidget,
  shinyRenderWidget,
  shinyWidgetOutput
)
importFrom(httr,
  GET,
  POST,
  add_headers,
  content,
  content_type_json,
  status_code
)
importFrom(jsonlite,
  fromJSON,
  toJSON
)
importFrom(methods,
  new,
  setClass,
  setGeneric,
  setMethod,
  setValidity
)
importFrom(r2r,
  hashmap,
  keys,
  query
)
importFrom(rentrez,entrez_fetch)
importFrom(stats,
  cor,
  runif,
  setNames
)
importFrom(stopwords,stopwords)
importFrom(text2vec,
  TfIdf,
  create_dtm,
  create_vocabulary,
  fit_transform,
  itoken,
  prune_vocabulary,
  vocab_vectorizer,
  word_tokenizer
)
importFrom(tidyr,pivot_wider)
importFrom(utils,browseURL)
importFrom(xml2,
  read_xml,
  xml_find_all,
  xml_find_first,
  xml_text
)
