50d220d0f7eceb794d2310eb3ca39f6d *DESCRIPTION
2c408ff99a3d22cba87babaa4809ffc8 *NAMESPACE
9b663c57a1fa49b5acc26471fe157dfd *NEWS
9eb720c77c041dae2ad3b9370533b444 *R/AllClasses.R
bc8ffc70a84d1ca573e0e73bfc3bbbaa *R/AllGenerics.R
7d279d17de90f65d4f3bde59fe65da5b *R/GSVA-package.R
59574ae6e07d16e21f7b02a200a68ac6 *R/GSVA-pkg-defunct.R
6c94acefff027e3f5eadc3fc1ec5fd34 *R/GSVA-pkg-deprecated.R
7451112eae4048f193ffa207564e5705 *R/GsvaMethodParam.R
10d70d8ce8d6a220b36b421820c4f895 *R/average.R
95f5665f4a984ee6dfafa49efe0852ff *R/block_processing.R
defc624d6a13908bd772492002a97382 *R/genesets.R
b91817acd12884b7ea55c4fbc663fc0f *R/gsva-global.R
36ca2251fc82c88ca4456f4a1400f49c *R/gsva-serialization.R
b1060304cc372bf4ec285932a8a194f9 *R/gsva.R
efb0857b9ea75fffe946712eb3fcd8ff *R/map-reduce.R
b9dc820b43f9202894fb997cad429d32 *R/methods-ShinyApp.R
8ba1c11b13a946a940d29f9a0213c635 *R/parquet-duckdb.R
6708c33c73986891d6a34adb39a0d5fe *R/parquet-seed.R
e38aa3d3442ae579ad84174df8a7b93e *R/plage.R
abfea8283e6c8d7c8280e65389132905 *R/spatial.R
8e44fa52101bb21c732211fb68297ac8 *R/ssgsea.R
81d1128ceb36cd845ad6862f6428841c *R/utils.R
78bf590f726a79b12cc03bdc6e74ead7 *R/zscore.R
9c6efd7ddf2d97709f75552290099051 *R/zzz.R
37a7cdb041349afae7062bd64f253e21 *README.md
21c9401b8c07f38d762ade4612fc4ffe *build/partial.rdb
b163614ca9df81349d82b85831e4d1f3 *build/vignette.rds
453d5f90bd6225b9bbf8fa9b9dd1e516 *cleanup
f1b7a918db657cba60304eb978b2450f *inst/CITATION
482c7bfa6e0cdbe02ffc00a6e33e1082 *inst/doc/GSVA.R
3a63b0e93ad22b4240e9eff12e0d3bc8 *inst/doc/GSVA.Rmd
db0609267a7786f02d864322eff14a37 *inst/doc/GSVA.html
659904b2fb22e9794097f9547812bafd *inst/doc/GSVA_HPC.R
9a23e9461b41eb9cf9cad404dac5361e *inst/doc/GSVA_HPC.Rmd
7b67cfa5c8ff2a182f0b5caed758cd9f *inst/doc/GSVA_HPC.html
012ca397f863b5851a1e77feb474d84c *inst/doc/GSVA_proteomics.R
00c24afa138c8d6cdad0ed13b1721095 *inst/doc/GSVA_proteomics.Rmd
03d82e2137726784c4a1158e701b57b5 *inst/doc/GSVA_proteomics.html
b089bd9fe3825bc13ff40fe16b4adea2 *inst/doc/GSVA_scRNAseq.R
abae20cc4e79db5e20f4d25e71a13d02 *inst/doc/GSVA_scRNAseq.Rmd
ca70d59e02d7d1688c03c98e73b2dd41 *inst/doc/GSVA_scRNAseq.html
5df5af5a6e1b846076db5d0b9c09856e *inst/doc/GSVA_spRNAseq.R
a45d603fe8a312a8ccac317b7e6ab04a *inst/doc/GSVA_spRNAseq.Rmd
c999c2826ed453a1d498b3dbfd87be71 *inst/doc/GSVA_spRNAseq.html
bf968c2f1b5abd82360ced0ad33aae9e *inst/shinyApp/argumentsDataModule.R
25e2b694159c4e7d07f774614d9a3c58 *inst/shinyApp/closeModule.R
dc214dc088b1cd01628804b5296afb06 *inst/shinyApp/downloadModule.R
9cdb81086c4211775369cd3474d469e8 *inst/shinyApp/geneSetsModule.R
2c65b8e76c0322d7ed8ee293f2c898ec *inst/shinyApp/global.R
864045a809dcb3b5279972f874e20318 *inst/shinyApp/matrixModule.R
15da683e3de9cbf03c45be58a0de0d41 *inst/shinyApp/modalGSVAModule.R
d767155a0a53077a837552b5a9537ce8 *inst/shinyApp/plot1_Module.R
56a93a0297bd15075a35e940e6718571 *inst/shinyApp/plot2_Module.R
7fb0745614ce1f6818ae24101df1f571 *inst/shinyApp/plot3_Module.R
b651b3e5eb4ace75f5358a3d900c8057 *inst/shinyApp/server.R
bed624bd4a37319dce3c5d3351299803 *inst/shinyApp/ui.R
c6fd28f6180768396f84bf00f43a644f *inst/shinyApp/www/GSVA.png
871bcb8b39094743ba2792a9e8f0017c *inst/shinyApp/www/style.css
24be5a0a355233f893ea8fea595273e2 *inst/templates/slurm-gsva.tmpl
615ea5bf1f46f9358ad212e2ea3279eb *inst/unitTests/test_avgCcode.R
dfc89cca384a0852ca7de6079b018b19 *inst/unitTests/test_blockgrids.R
bb9b2559d3237097e95c94e51143f237 *inst/unitTests/test_genesets.R
9531a3f536a3709466267a35ce884e2c *inst/unitTests/test_gsvaCcode.R
8063132ed9c67887be20a31d34bdd148 *inst/unitTests/test_gsvaColRanks.R
4fb377cad7c4c3caedcbeecad5310582 *inst/unitTests/test_gsvaRowNorm.R
c1d25f8fd28bd18c25145b352e3d0ca7 *inst/unitTests/test_inputdatacontainers.R
91f3f69c8f06e44e7419dc845800e838 *inst/unitTests/test_mainAPI.R
ac0c157d9615fdd69eea88b4ae594585 *inst/unitTests/test_mapReduce.R
276c31eb65b1e99f46c0776499489967 *inst/unitTests/test_navalues.R
d13dd9dde81beb8c86a0594cda26b462 *inst/unitTests/test_ondisk.R
ed33c43811ac4b812687bab04b409611 *inst/unitTests/test_outputmetadata.R
afe7306e950b7810ed78f4f1235cc31d *inst/unitTests/test_parallel.R
669275ba6bbe4fb1cddb452b6a8c97b6 *inst/unitTests/test_params.R
cad4912d2ecedef026e28dc24cd3d474 *inst/unitTests/test_plage.R
1bdb41c725dc9461fced9fe9d8f1f75a *inst/unitTests/test_rankbounds.R
4f1fb3e35a8bd93b6d41c25625f96e6f *inst/unitTests/test_serialization.R
08320a8cbfca0781ba4d1db7eb3e4c5f *inst/unitTests/test_sparse.R
4bc1b46c06a5bde89671074b871498cd *inst/unitTests/test_spatial.R
9775e961ead52fbedfcc2aa117c2f888 *inst/unitTests/test_ssgsea.R
dccd81e67deece23e396e51881156eb5 *man/GSVA-pkg-defunct.Rd
374d4e6a4154767c8d651b4bb1c9f5e0 *man/GSVA-pkg-deprecated.Rd
1bd1563c5d1926edbe4f769720afeee9 *man/GsvaExprData-class.Rd
92ea07497bde8581dfd1b4100ae90377 *man/GsvaGeneSets-class.Rd
b9275cb20aed6033a5c0071206d4e9ab *man/GsvaMethodParam-class.Rd
62c390073b1fa8842652cc42de07c284 *man/GsvaParquetSeed-class.Rd
3181339fb6855ae0ef5a3f2eb795ebfb *man/avgParam-class.Rd
f0b589edea0ec231ac4ce63263707a7f *man/computeGeneSetsOverlap.Rd
68ae87f81564dbddbf1e69b5999a8d65 *man/deduplicateGeneSets.Rd
7e46d890bd243147c0b792340742cde2 *man/filterGeneSets.Rd
80f333be69a199a08a8c6557af4d76a8 *man/geneIdsToGeneSetCollection.Rd
4674de6bcda06f56d347b085507ec010 *man/geneSets.Rd
7bf6ffe7416ac6bd694c5fef8aa471fc *man/gsva-serialization.Rd
7e05efcb7207ee04b56f64626af93451 *man/gsva.Rd
6ce181dc644dc0530ac154ef6b650fb5 *man/gsvaAnnotation.Rd
70c765a1dc28e5fb34cafe5e790a2aa7 *man/gsvaEnrichment.Rd
b57a7eda54f133ac60967e0f66277bd8 *man/gsvaParam-class.Rd
940078b257b78f99998396e662bc9b13 *man/gsvaRanks.Rd
e16143e4afa84c18f4d96e25091f8c69 *man/guessGeneIdType.Rd
c3d8987b5e4eaf2530fb956cd80e4b0a *man/igsva.Rd
0588a44d37645d4cace83246a248e93b *man/map-reduce.Rd
3ff3ed81fe65f90d9db453650d52feb1 *man/plageParam-class.Rd
80f36344827c81405833759736906271 *man/readGMT.Rd
2b128356de2eeb9acc22aae5d87c13f1 *man/spatCor.Rd
5c1af4db557f90782ba22b7a49e77402 *man/ssgseaParam-class.Rd
6a8a2868c548c1cbb6c11de90c13b193 *man/zscoreParam-class.Rd
4a22b95fb05b513df57e2eb38bbd91c5 *src/average.c
b6ecd133de52baa3db8f70ce9efc01b5 *src/ecdfvals.c
cd7ce9d2fbfb93ddb126927a25baae4c *src/kcdfvals.c
c090d834965cac8eeae3c320fe681f6b *src/kernel_estimation.c
1ddba9763b9914df7d3696b300c5795e *src/ks_test.c
8b963ad149189e82cd5f3f03d441aa4a *src/register_cmethods.c
2eeccbaaa51a26a9668cd4c11189884e *src/row_rngs_nzrngs.c
f6f0debb5e82610bef40f9c7528137d0 *src/utils.c
f2310c7773e0506a7998fe8de54969ac *tests/runTests.R
0f0b2b311b69698b52532c4cbf123b15 *tests/test_gsva_newapi.R
8c29672b60d2f44b17bb143e0be9ed20 *tests/test_gsva_newapi.Rout.save
1acc9a45221e1755a3561b5e56b2495e *tests/test_plage_newapi.R
dabb8ac193abf44896bd5fc493402680 *tests/test_plage_newapi.Rout.save
f9e8c5538f10663ad3b18cfbc7055b71 *tests/test_ssgsea_newapi.R
19da3a1db67ab043c5ffa5f8ba84e2b0 *tests/test_ssgsea_newapi.Rout.save
558b265dc798838662e1e214a3155035 *tests/test_zscore_newapi.R
17ef6b670e8c0334f9c456df21991b7a *tests/test_zscore_newapi.Rout.save
3a63b0e93ad22b4240e9eff12e0d3bc8 *vignettes/GSVA.Rmd
f65b0d6d690f46d39552aa78e491c349 *vignettes/GSVA.bib
9a23e9461b41eb9cf9cad404dac5361e *vignettes/GSVA_HPC.Rmd
00c24afa138c8d6cdad0ed13b1721095 *vignettes/GSVA_proteomics.Rmd
abae20cc4e79db5e20f4d25e71a13d02 *vignettes/GSVA_scRNAseq.Rmd
a45d603fe8a312a8ccac317b7e6ab04a *vignettes/GSVA_spRNAseq.Rmd
7f8eb02c3a715cc27c9e6954bd8d3b38 *vignettes/methods.png
a407c8f86caaae0ecbe41d26a3e88319 *vignettes/webapp1.png
93e0a4fffed5119c01f62a4751d13f03 *vignettes/webapp2.png
