Package: GOSemSim
Type: Package
Title: GO-terms Semantic Similarity Measures
Version: 2.39.2
Authors@R: c( person(given = "Guangchuang", family = "Yu",             email = "guangchuangyu@gmail.com", role  = c("aut", "cre")),
              person(given = "Alexey",      family = "Stukalov",       email = "astukalov@gmail.com",     role  = "ctb"),
              person(given= "Pingfan",      family = "Guo",            email = "1178431277@qq.com",       role  = "ctb"),
              person(given = "Chuanle",     family = "Xiao",           email = "xiaochuanle@126.com",     role  = "ctb"),
              person(given = "Lluís",       family = "Revilla Sancho", email = "lluis.revilla@gmail.com", role  = "ctb")
             )
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Description: Semantic similarity analysis of Gene Ontology (GO) annotations
    provides a quantitative framework for comparing GO terms, gene products,
    and gene clusters. GOSemSim implements widely used information content- and
    graph-based similarity measures, including the methods of Resnik, Schlicker,
    Jiang, Lin, Wang and TCSS. It also provides utilities for preparing
    annotation data and combining term-level similarities into gene- and
    cluster-level scores.
Depends: R (>= 4.2.0)
LinkingTo: Rcpp
Imports: AnnotationDbi, DBI, digest, GO.db, methods, rlang, stats,
        utils, yulab.utils (>= 0.2.3)
Suggests: AnnotationHub, BiocParallel, BiocManager, clusterProfiler,
        DOSE, knitr, org.Hs.eg.db, quarto, readr, testthat, tidyr,
        tidyselect, ROCR
VignetteBuilder: quarto
ByteCompile: true
License: Artistic-2.0
Encoding: UTF-8
URL: https://yulab-smu.top/biomedical-knowledge-mining-book/
BugReports: https://github.com/YuLab-SMU/GOSemSim/issues
Packaged: 2026-06-29 22:59:45 UTC; biocbuild
biocViews: Annotation, GO, Clustering, Pathways, Network, Software
Roxygen: list(markdown = TRUE)
Config/roxygen2/version: 8.0.0
git_url: https://git.bioconductor.org/packages/GOSemSim
git_branch: devel
git_last_commit: e6caf6d
git_last_commit_date: 2026-06-29
Repository: Bioconductor 3.24
Date/Publication: 2026-06-29
NeedsCompilation: yes
Author: Guangchuang Yu [aut, cre],
  Alexey Stukalov [ctb],
  Pingfan Guo [ctb],
  Chuanle Xiao [ctb],
  Lluís Revilla Sancho [ctb]
