e92b8dfc1528e5fc5ccede34ab08437f *DESCRIPTION
c17956f3925d752df93bcb58d80880bc *NAMESPACE
5f9f19475000d4e859b1f505bbefc582 *R/DBA.R
8c991c920826053ee368b56669782516 *R/RcppExports.R
04c93a90bdfd6cee97686c015566fc42 *R/analyze.R
e8e3f8ccaf7777c664dcf4e65b35454a *R/analyze_deseq2.R
5a445febfcb76331f4c3800341d18d80 *R/analyze_edgeR.R
5a69bc545ee5d9ef442d001b4ab2bd44 *R/blacklist.R
65cbf13f904b617425a69832b2c86e42 *R/contrast.R
afd04989f1eabdb8139c5f15543438ab *R/core.R
4b5e4b7e8c60ba8ca433c4a32b058aa0 *R/counts.R
7ade8ce185e09cc3f80a78e745ddc303 *R/cpp_wrapper.R
8b7742f7168ed6d2a9a0a1806104acae *R/helper.R
6b249d37c241523aed29d30a1dd13da9 *R/io.R
c47afc5a67ee8343abdbbdb1bc805a7b *R/model.R
736a5781d2e3da65fabe087212636a65 *R/normalize.R
3dc98b6255a01b0e3b1d68cf0d446865 *R/parallel.R
f645d4ae0c98c6622639eff9ee40b7f5 *R/plotProfile.R
d2d2922e2b087a81cd3c4664356c2092 *R/plots.R
ac0ed53aa844005c08d70698be13ebad *R/report.R
d4fd7cd87e1a485fe90697da6981839d *R/utils.R
e7faccf4310cf9bf7d781141e25a73e9 *build/vignette.rds
866ab5c34a0685e7389e6bec97e09457 *data/datalist
e781e26ba7ef1504ca844b8115148d94 *data/tamoxifen_analysis.rda
70842f89055402bb906275a50d5513f2 *data/tamoxifen_counts.rda
cbd0b3fcb8d25fd242601cdf06a7eb68 *data/tamoxifen_greylist.rda
8ae1f1a0eb71715db122d60ce12bc7f2 *data/tamoxifen_peaks.rda
677f7534eac01c2585952c86a38523c5 *inst/CITATION
87207dbaedf8bf6ec2b98acb303438e2 *inst/NEWS.Rd
d8107f8e5276cc5d283c6c3e0de47d34 *inst/doc/DiffBind.R
d32d0ba4502f6d9fb9a5142e1de48543 *inst/doc/DiffBind.Rnw
8d51f19a062dc9b21b4b48c347a5fdde *inst/doc/DiffBind.pdf
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ac2926261ee728c6e21711f844a7b2d8 *inst/extra/GenerateSpikein.R
9428576d469a5907f71d83e836b79494 *inst/extra/config.csv
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060c98c62a827d973ef898c2f2674086 *inst/extra/parallelFactor.rda
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abadc9c3e5d5a4af5ede63db0f2460cf *inst/extra/peaks/T47D_ER_2.bed.gz
861d9979fb2804769a8064601d65b4f3 *inst/extra/peaks/TAMR_ER_1.bed.gz
6cd0a2f56a33f879298732112e796c8c *inst/extra/peaks/TAMR_ER_2.bed.gz
a76aa60c30b61edfaf886c21559c16ac *inst/extra/peaks/ZR75_ER_1.bed.gz
83f2ad0a9f4d6e1172e3281489389702 *inst/extra/peaks/ZR75_ER_2.bed.gz
87b3a65f0eabd82c182e2c9eaeb3989e *inst/extra/plotProfileDemo.Rmd
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ee99b29604109a5dc02e097a5fe33e55 *inst/extra/tamoxifen.csv
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163c88f0bd92026d51caf134ab017375 *inst/extra/tamoxifen_allfields.csv
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71e520539a3a9cd76f8cc47453dae2a8 *inst/extra/testdata/bed_without_header.bed.gz
8bc290017de0aa77f499cae0603f4919 *inst/extra/testdata/raw_with_header.raw.gz
7100afa443b5e1df616ff0fddc9378e8 *inst/extra/testdata/raw_without_header.raw.gz
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022683e5da08687bb7f563a0e61d05a7 *inst/extra/testdata/test_sampleSheet_Spaces.xlsx
a1d35f9b21b8a8c9bda48342f10eb70f *inst/extra/testdata/test_sampleSheet_comment_char.csv
91d46746adcf4491bf1bb550a26a0773 *man/DiffBind-globals.Rd
3a328a6a9abcad3674849e884b7ed8c0 *man/DiffBind-package.Rd
5a7b57f15f876f816e89617150b314cd *man/DiffBind3.Rd
52a16f99eb7e6b2f1583f1a5e661a362 *man/dba.Rd
767030af1d0dfbbb7a6a5e4b8a540fb3 *man/dba.analyze.Rd
d5d260e455cf91e2b85846ee2ac30b74 *man/dba.blacklist.Rd
645daf0d4d5c794992949ae8faf803f8 *man/dba.contrast.Rd
5303f2d9af624728aea8942f5762c05c *man/dba.count.Rd
f8183c52d2206fd4419e03075a60b015 *man/dba.load.Rd
17de19ff33caf5d45d8ba2a2bb91a398 *man/dba.mask.Rd
b68b37646b2391c078d127e6c3220774 *man/dba.normalize.Rd
8042be381a47f4137207d6fac4bce394 *man/dba.overlap.Rd
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54ea428486153505a47a61357ea7db1f *man/dba.plotBox.Rd
d1bc1d3262cc6e800bb492fca8c0b166 *man/dba.plotHeatmap.Rd
817555d3fe76afd9e40e91833ac49b3f *man/dba.plotMA.Rd
415e33f7304351eac1dc82729071cd7d *man/dba.plotPCA.Rd
03d27d1a2d096407406d74e198be4e42 *man/dba.plotProfile.rd
c26b316e58397b7d5b3a15fa9f42966f *man/dba.plotVenn.Rd
e491c6507c6c26fa1f5583c08470d17d *man/dba.plotVolcano.Rd
ad8340bc01d717fcb2176f1083c98595 *man/dba.report.Rd
a8029700bc260d1f48efcf488a080c7a *man/dba.save.Rd
72fa9cef480c91ec2cae20173a7969e7 *man/dba.show.Rd
5ce0fc161f15933210d4cf54441a6f3a *man/print.DBA.Rd
7490cce976d8d4115af628214d904ca0 *man/tamoxifen.Rd
e426672c9bde38321386961a36aecac2 *src/Makevars
63fe8c0a4c414f4312ce6a804a46174d *src/RcppExports.cpp
8b2f28669c7c1c929ffb96334983a561 *src/bamReader.cpp
4110519036e4f7b1c6fa5dc365d4cb11 *src/bamReader.h
b6f4b3f91a93e5a5b9d3019ee537bb64 *src/bam_plbuf.c
7ff2712d5bdbdb035bac0efacf94bd8d *src/bedReader.cpp
6fa6a91f2de24c13e365cf7fa825b28e *src/bedReader.h
7567b65ae2526223c15dc881472f7499 *src/bitBucket.cpp
fe78540fb5aac73279d9d7c92e4d8f8a *src/bitBucket.h
703af74b53e0fbb57f97271ebe13ff9d *src/croi_func.cpp
ebdc56eb70937776e24ae3702f56ccc9 *src/croi_func.h
4ddfecd9deb354caa9538aa00fe784e5 *src/croi_main.cpp
5cffe3b18ee415c14ef89b5e17dc5dfa *src/densitySet.cpp
09792cd417e93d28de5627f95de74c4c *src/densitySet.h
7067523d763dc4de32b8271fc336c967 *src/iBucket.cpp
b5a3f02a6879a783744e9157e5efc3b8 *src/iBucket.h
39325204f53b5e71d3fc2b6ce7126cea *src/interval.cpp
f9540f6f879c628e6737030ee940397c *src/interval.h
33eab710fb356ad5fcf01892122e01a2 *src/intervalDensity.cpp
24ff1d9bd51ee17a9fb59fffd06a5b0c *src/intervalDensity.h
6a27997f006ce0aa6e1ba5248f0e5325 *src/intervalNode.cpp
664fe6bce92e58f4bc7d2bbc79bf17a2 *src/intervalNode.h
469452d00706172c4869818d783ad892 *src/intervalSet.cpp
22faf0c4cc6117ba0946cac0b7bb23eb *src/intervalSet.h
cd91d5f42896a85a794bf1e4d4923265 *src/intervalTree.cpp
ad77a22d349ce78002f6e069bc0cdef0 *src/intervalTree.h
4d0714b234c1c922c5ea8baf731af7b0 *src/merge.cpp
55436ceae8b07746432e82921e136ab6 *src/mergeOne.c
5aaece79bd9cf1d299cdd8c30c07e21e *src/nodeGroup.cpp
577170a02779ee42dd15fb335f6486c4 *src/nodeGroup.h
c396a78e3c095674da926888ed9f81d8 *src/peakOrder.cpp
d370d22129188eca94bc22a9bdc029fa *src/reader.cpp
e7dbb2d6de42876f00fc433c08f23a25 *src/reader.h
2194f751cc49fb288974b0e1d1991ed5 *src/sequence.cpp
9665bc8c9323e402a75c4ef16117da46 *src/sequence.h
3d833c34f09d55902e3deace8b6d8321 *src/util.cpp
2d2f25e761a20ca5cc3ebddb1c2bcbf6 *src/util.h
52198666721a346e7fc0d2809b4fdc27 *tests/testthat.R
f46f660eb332e71a67c7728ce8cceeb0 *tests/testthat/test_cmerge.R
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d04fd8dd88eb2e7c674921ebe93488a0 *tests/testthat/test_minCount.R
289b3378cac917cc1a693576271eedf1 *tests/testthat/test_normalize.R
4a01941ab3ace6eebe9c17544445576b *tests/testthat/test_readPeaks.R
998e468b6bcc9ebc1185fa0fdddb7042 *tests/testthat/test_saveload.R
d32d0ba4502f6d9fb9a5142e1de48543 *vignettes/DiffBind.Rnw
422f53be646243048814b09ac621fa97 *vignettes/DiffBind.bib
41b5ec38b59e05f55861c57abf77b262 *vignettes/plotProfile-MCF7.png
ee82196cc93a5cb6f7cc5f3943c1379f *vignettes/plotProfile-default.png
28ff29ff59a759806cc23f1c6a6d46e3 *vignettes/plotProfile-merge.png
