9b85812507e55acd2887e60e7105e323 *DESCRIPTION
d051a2a284077dd6a589af73c37fd10a *NAMESPACE
93d6ee2fdc8bf8fe5ca16b0e4685c4b4 *R/DEP.R
bd828ce2418e02be8cd70609edd86c66 *R/data.R
30cf847a821a944a78eaf8a3472275bc *R/enrichR_functions.R
b0c2268d4e85c47f90ebc191fb1db6ee *R/functions.R
372b51556e654ce8c925df8ede05ceca *R/gg_theme.R
7cf18c1b71753402740cc8674a953fa7 *R/plot_functions_QC.R
123881d1d9ca879305d58ed66555394c *R/plot_functions_explore.R
9af59d359a2d6dcc4b5582026d4b2f00 *R/plot_functions_frequencies.R
64ecf6e84f4bbde33fd0b6f9b0ae0a08 *R/plot_functions_results.R
ced16447b374518e8df3760c48abd893 *R/run_app_function.R
c30f207430f61fa4ec7b07442f5bba21 *R/sysdata.rda
90884f58bed15d0f234dbc139de32f74 *R/workflow_functions.R
a2619bd1e3f4fb1ab5bdb3e0881de0dd *R/wrapper_functions.R
7a7c0e7ed4c976fbfe386d06c7fb8b55 *R/zzz.R
8263991776a87b9c3f490ddd7d5fd73b *README.md
f16362ee3f05fd8c96b03439d60ce1c6 *build/vignette.rds
012ade611fe01ac5beee34cd66934dc6 *data/DiUbi.rda
53f1d3c0a6f619c84210e99eab6634d3 *data/DiUbi_ExpDesign.rda
c3a15d1eb709121b5fbe591ab6a441a8 *data/UbiLength.rda
1302a45ae3cce9fd1a840960cc031a38 *data/UbiLength_ExpDesign.rda
7eeadf26f7f2edd22e716ce01cadaf83 *inst/CITATION
43d1a1997726992ccac9701a3b8efdfc *inst/NEWS.Rd
85374696589635879dcc0ff7f09f9bed *inst/Report.Rmd
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2d6efefdab7efa5f47f77f9da8806c6c *inst/doc/MissingValues.R
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95a5d8ea7d02f7ceb6f9dba3db1ee234 *inst/shiny_apps/TMT/app.R
a8b8b5500cda595b76517e7d66186792 *man/DEP.Rd
5bfdd5bd7566447c522c61babeb31d64 *man/DiUbi.Rd
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0e0d2456fa7e19fb36441217b5b0c7ee *man/LFQ.Rd
d3a18874320c239a606490c26776839f *man/TMT.Rd
8b6df7b7f8d02f1704e27477c6a151e2 *man/UbiLength.Rd
bf3682836ddc2e21dbd930a498aef534 *man/UbiLength_ExpDesign.Rd
7318276afd00d845ed59d4ee99796ccd *man/add_rejections.Rd
3dc2c21a878f5a005b532afddf1b7dbc *man/analyze_dep.Rd
aa562f241a4724e1cfee42046a6c50b7 *man/filter_missval.Rd
5b98a498a6b2b56a1c2418316f62ea46 *man/filter_proteins.Rd
7df3c3ff0b913d6989170f0d7535a81c *man/get_df_long.Rd
f1aeba75c71cc8d3326fb5a663de7179 *man/get_df_wide.Rd
0dab372a034b67ce21b4cc49538d4592 *man/get_prefix.Rd
8ac3474535f579f0014be09983ab691b *man/get_results.Rd
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5a49e19a97f9a46f7be0a352db11f0be *man/import_IsobarQuant.Rd
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1d1ba74a614aa550335e0dbc1854e613 *man/make_unique.Rd
913a291247dad920146c641d3d96ae10 *man/manual_impute.Rd
5ae8c2b6d0b6d6bd99ba661ae28ab187 *man/meanSdPlot.Rd
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5c059f88e4cf84ca5c38b5152619f434 *man/plot_frequency.Rd
d780f4c618926f9b3e249e0543a4a744 *man/plot_gsea.Rd
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1b39bfdac48d0d582eb2d769019b26af *man/plot_numbers.Rd
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9f210b9e8b7133fe66f83f8c176366ce *man/plot_volcano.Rd
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c67768aedddd62497e3fc902fd1fa6ec *man/run_app.Rd
a3b5bef37c97251f0a477d5775b7558a *man/se2msn.Rd
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07d23aae6b4bd66f8c8d842276bbd1a2 *man/theme_DEP1.Rd
357e518d8da8ec330b42106cd2217d0a *man/theme_DEP2.Rd
c52be912bca1ffe7f29866e9243adbb1 *tests/testthat.R
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cd938955228b9a51d5f258bffcc471cd *tests/testthat/test_3_imputation.R
1e1a224be5fbd3d85decfb5bd33b717b *tests/testthat/test_4_differential_testing.R
7e5e9626154b153061530d0bdd90f248 *tests/testthat/test_5_plot_functions_results.R
b81e85db09c908f2a413a085a8e7e436 *tests/testthat/test_6_plot_functions_QC.R
45966bde4f19aa2a887549716b5c3f8c *tests/testthat/test_7_plot_functions_frequencies.R
922f12667daaf9ef7b4cf3034de22018 *tests/testthat/test_8_plot_functions_explore.R
e79f1f7502cc35ea07bf5358eef642e0 *tests/testthat/test_9_workflows.R
2fdce19f49ee12a6770881664444b411 *tests/testthat/test_9a_wrapper.R
0d7ee01f3565a4dc278ec0954c6aba98 *tests/testthat/test_shiny_app.R
5ac4b50e09ec10edf35d5b40c0a66aff *vignettes/DEP.Rmd
c279698a729e2c848cd8785a4d09e732 *vignettes/MissingValues.Rmd
