Package: CyFj11
Type: Package
Title: Parse FlowJo V11 Workspace Files and Export to FlowJo V10
Version: 0.99.113
Authors@R: c(
    person("Bernd",    "Jagla",
           email   = "bernd.jagla@pasteur.fr",
           role    = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-7696-0484",
                       affiliation = "Institut Pasteur, scBiomarkers UTechS & Bioinformatics & Biostatistics Hub")),
    person("Slobodan", "Culina",
           email   = "Slobodan.culina@pasteur.fr",
           role    = "aut",
           comment = c(affiliation = "Institut Pasteur, scBiomarkers UTechS")),
    person("Francois", "Le Guerroue",
           email   = "francois.le-guerroue@pasteur.fr",
           role    = "aut",
           comment = c(affiliation = "Institut Pasteur, scBiomarkers UTechS")),
    person("Esma",     "Karkeni",
           email   = "esma.karkeni@pasteur.fr",
           role    = "aut",
           comment = c(affiliation = "Institut Pasteur, scBiomarkers UTechS")),
    person("Milena",   "Hasan",
           email   = "milena.hasan@pasteur.fr",
           role    = "aut",
           comment = c(affiliation = "Institut Pasteur, scBiomarkers UTechS"))
    )
Description: Provides functions to parse FlowJo v11 workspace files
    (.flowjo) and extract gating information, populations, and associated
    FCS files. Includes utilities for exporting data to FlowJo v10
    workspace format. The package enables bidirectional data flow between
    FlowJo and R/Bioconductor, facilitating reproducible analysis
    workflows.
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.6.0)
Imports: jsonlite, dplyr, flowWorkspace, flowCore, readr, rlang,
        tibble, tidyr, xml2, methods, scales, magrittr, stats, utils
Suggests: testthat (>= 3.0.0), Biobase, CytoML, FlowSOM,
        flowWorkspaceData, ggcyto, knitr, mockery, BiocStyle, qpdf,
        rmarkdown
VignetteBuilder: knitr
biocViews: FlowCytometry, DataImport, Infrastructure, Preprocessing
URL: https://github.com/C3BI-pasteur-fr/CyFj11
BugReports: https://github.com/C3BI-pasteur-fr/CyFj11/issues
Roxygen: list(markdown = TRUE)
Config/roxygen2/version: 8.1.0
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/CyFj11
git_branch: devel
git_last_commit: ab0d40a
git_last_commit_date: 2026-09-15
Repository: Bioconductor 3.24
Date/Publication: 2026-10-09
NeedsCompilation: no
Packaged: 2026-10-09 21:07:30 UTC; biocbuild
Author: Bernd Jagla [aut, cre] (ORCID: <https://orcid.org/0000-0002-7696-0484>,
    affiliation: Institut Pasteur, scBiomarkers UTechS & Bioinformatics
    & Biostatistics Hub),
  Slobodan Culina [aut] (affiliation: Institut Pasteur, scBiomarkers
    UTechS),
  Francois Le Guerroue [aut] (affiliation: Institut Pasteur, scBiomarkers
    UTechS),
  Esma Karkeni [aut] (affiliation: Institut Pasteur, scBiomarkers UTechS),
  Milena Hasan [aut] (affiliation: Institut Pasteur, scBiomarkers UTechS)
Maintainer: Bernd Jagla <bernd.jagla@pasteur.fr>
