Package: CompensAID
Type: Package
Title: Automated detection tool for spillover errors
Version: 0.99.6
Authors@R: c(person("Rosan", "Olsman", 
                    role = c("aut", "cre"),
                    email = "r.olsman@erasmusmc.nl",
                    comment = c(ORCID = "0000-0001-5070-0476")),
             person("Sarah", "Bonte", 
                    role = c("aut"),
                    email = "sarahm.bonte@ugent.be",
                    comment = c(ORCID = "0000-0002-0637-4893")),
             person("Mattias", "Hofmans", 
                    role = c("aut"),
                    email = "mattias.hofmans@uzgent.be",
                    comment = c(ORCID = "0000-0003-2061-7617")),
             person("Malicorne", "Buysse", 
                    role = c("aut"),
                    email = "malicorne.buysse@uzgent.be"),
             person("Katrien","Van der Borght",
                    role="aut",
                    email="katrien.vanderborght@irc.vib-ugent.be",
                    comment = c(ORCID = "0000-0003-1635-4359")),
             person("Yvan", "Saeys", 
                    role = "aut", 
                    email="yvan.saeys@ugent.be",
                    comment = c(ORCID = "0000-0002-0415-1506")),
             person("Vincent", "van der Velden", 
                    role = "aut", 
                    email="v.h.j.vandervelden@erasmusmc.nl",
                    comment = c(ORCID = "0000-0001-9457-3763")),
             person("Sofie", "Van Gassen", 
                    role = "aut", 
                    email="sofie.vangassen@ugent.be",
                    comment = c(ORCID = "0000-0002-7119-5330")))
Description: The CompensAID is an automated quality control tool, which determines for each marker combination in the FCS file, whether there a potential presence of reference errors. Such reference errors, which represent themselves in the form of skewed populations, are detected by integrating the Secondary Stain Index (SSI) score. Marker combinations with an SSI < 1 are flagged by CompensAID. 
URL: https://github.com/Olsman/CompensAID
BugReports: https://github.com/Olsman/CompensAID/issues
License: GPL (>= 3)
Encoding: UTF-8
RoxygenNote: 7.3.3
Imports: checkmate, dplyr, flowCore, flowDensity, ggcyto, ggplot2 (>=
        3.5.2), methods, ParallelLogger, reshape2, rlang, stats,
        tibble, tidyr, utils
biocViews: FlowCytometry, QualityControl, Preprocessing
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), BiocStyle
VignetteBuilder: knitr
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/CompensAID
git_branch: devel
git_last_commit: 68496b8
git_last_commit_date: 2026-01-12
Repository: Bioconductor 3.23
Date/Publication: 2026-01-21
NeedsCompilation: no
Packaged: 2026-01-21 21:59:58 UTC; biocbuild
Author: Rosan Olsman [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-5070-0476>),
  Sarah Bonte [aut] (ORCID: <https://orcid.org/0000-0002-0637-4893>),
  Mattias Hofmans [aut] (ORCID: <https://orcid.org/0000-0003-2061-7617>),
  Malicorne Buysse [aut],
  Katrien Van der Borght [aut] (ORCID:
    <https://orcid.org/0000-0003-1635-4359>),
  Yvan Saeys [aut] (ORCID: <https://orcid.org/0000-0002-0415-1506>),
  Vincent van der Velden [aut] (ORCID:
    <https://orcid.org/0000-0001-9457-3763>),
  Sofie Van Gassen [aut] (ORCID: <https://orcid.org/0000-0002-7119-5330>)
Maintainer: Rosan Olsman <r.olsman@erasmusmc.nl>
Depends: R (>= 4.1.0)
