Changes in version 0.99                         

Changes in version 0.99.2

  - Adding support to "mzTab-profile" field.

Changes in version 0.99.1

  - Address Bioconductor review process comments.

Changes in version 0.99.0

  - Bioconductor submission.

                        Changes in version 0.97                         

Changes in version 0.97.20

  - Preparation to Biocondutor submission.

Changes in version 0.97.19

  - Fix issue #45
  - Fix issue #46
  - Fix issue #47
  - Add method to handle sml/sme in MzTabM object.

Changes in version 0.97.18

  - Initial version of makeSummarizedExperimentFromMzTabM() to convert
    mzTabM object with MTD+SMF to SummarizedExperiment.
  - Add helper function mtdToSampleData(), inverse function of
    mtdFromSampleData().
  - Fix minor bug mtdFromSampleData.
  - Update tests and vignette.

Changes in version 0.97.17

  - Update and simplify the SummarizedExperiment export example in the
    vignette.

Changes in version 0.97.16

  - Update vignette with high-level functionality to export a mzTab-M
    file.
  - Add helper functions .NAtonull().
  - Add as.list().
  - Fix bug in instrument field sorting.
  - Support identifier for optional columns in SML, SMF, SME.
  - Update readMzTabM() to create a MzTabM object.
  - Update tests and examples.

Changes in version 0.97.15

  - Add functionality to generate mzTab-M content from a
    SummarizedExperiment.

Changes in version 0.97.14

  - Refactor setMtdInstrument(), setMtdDatabase(), setMtdCv(),
    setMtdContact(), setMtdField() as method.

Changes in version 0.97.13

  - Add function mtdFromSampleData() to create metadata (MTD) content
    including sample, MS run, assay and study variable information from
    a sample data data.frame.

Changes in version 0.97.12

  - Add fucntion mtdProtocol() for MTD section.
  - Update regex for CV parameter.
  - Support ms_run-parameter, assay-protocol_ref, assay-parameter,
    study_variable-ms_run_ref and contact-orcid.
  - Update tests and examples.

Changes in version 0.97.11

  - Add MzTabM class as a container for mzTab-M content.

Changes in version 0.97.10

  - First version of general read function readMzTabM()
  - Add example and tests.
  - Fix bug related study_variable[1-n]-group_ref
  - Change type study_variable_group[1-n] to CV param

Changes in version 0.97.9

  - Support "Parameter" as study variable group datatype.
  - Automatic datatype definition for study variable group supports
    "Parameter".

Changes in version 0.97.8

  - Add functions setMtdInstrument(), setMtdDatabase(), setMtdCv(),
    setMtdContact(), setMtdField() and updateMtdContent() for MTD
    section
  - Add examples and tests.

Changes in version 0.97.7

  - Add SME section code.
  - Add scripts to test export of mzTab-M 2.1 files.

Changes in version 0.97.6

  - MTD: add study_variable_group support (mzTab-M >= 2.1).
  - MTD: add STATO as one of the default CV ontologies.

Changes in version 0.97.5

  - Add functionality to create/format the SML section: sml_create(),
    sml_sort(), sml_add_study_variable_columns().

Changes in version 0.97.4

  - Restructure helper functions to be usable across SMF and SML
    functionality.

Changes in version 0.97.3

  - Add utility function parse_cv_param().

Changes in version 0.97.2

  - Add vignette.

Changes in version 0.97.1

  - Addition of SMF related functions to the package.

Changes in version 0.97.0

  - Move code for metadata creation and formatting from the
    lifs-tools/rmzTabM repository.