scatterHatch
This is the development version of scatterHatch; for the stable release version, see scatterHatch.
Creates hatched patterns for scatterplots
Bioconductor version: Development (3.24)
The objective of this package is to efficiently create scatterplots where groups can be distinguished by color and texture. Visualizations in computational biology tend to have many groups making it difficult to distinguish between groups solely on color. Thus, this package is useful for increasing the accessibility of scatterplot visualizations to those with visual impairments such as color blindness.
Author: Atul Deshpande [aut, cre]
Maintainer: Atul Deshpande <adeshpande at jhu.edu>
citation("scatterHatch")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("scatterHatch")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scatterHatch")| Creating a Scatterplot with Texture | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | CellBiology, SingleCell, Software, Spatial, Visualization |
| Version | 1.19.0 |
| In Bioconductor since | BioC 3.14 (R-4.1) (5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.1) |
| Imports | grid, ggplot2, plyr, spatstat.geom, stats, grDevices |
| System Requirements | |
| URL | https://github.com/FertigLab/scatterHatch |
| Bug Reports | https://github.com/FertigLab/scatterHatch/issues |
See More
| Suggests | knitr, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | scatterHatch_1.19.0.tar.gz |
| Windows Binary (x86_64) | scatterHatch_1.19.0.zip |
| macOS Binary (big-sur-x86_64) | scatterHatch_1.19.0.tgz |
| macOS Binary (sonoma-arm64) | scatterHatch_1.19.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/scatterHatch |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/scatterHatch |
| Bioc Package Browser | https://code.bioconductor.org/browse/scatterHatch/ |
| Package Short Url | https://bioconductor.org/packages/scatterHatch/ |
| Package Downloads Report | Download Stats |