plyxp
This is the development version of plyxp; for the stable release version, see plyxp.
Data masks for SummarizedExperiment enabling dplyr-like manipulation
Bioconductor version: Development (3.24)
The package provides `rlang` data masks for the SummarizedExperiment class. The enables the evaluation of unquoted expression in different contexts of the SummarizedExperiment object with optional access to other contexts. The goal for `plyxp` is for evaluation to feel like a data.frame object without ever needing to unwind to a rectangular data.frame.
Author: Justin Landis [aut, cre]
, Michael Love [aut]
Maintainer: Justin Landis <jtlandis314 at gmail.com>
citation("plyxp")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("plyxp")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("plyxp")| plyxp Usage Guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Annotation, GenomeAnnotation, Software, Transcriptomics |
| Version | 1.7.3 |
| In Bioconductor since | BioC 3.20 (R-4.4) (2 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.5.0) |
| Imports | dplyr, purrr, rlang, SummarizedExperiment, tidyr, tidyselect, vctrs, tibble, pillar, cli, glue, S7, S4Vectors, utils, methods |
| System Requirements | |
| URL | https://github.com/jtlandis/plyxp https://jtlandis.github.io/plyxp |
| Bug Reports | https://www.github.com/jtlandis/plyxp/issues |
See More
| Suggests | devtools, knitr, rmarkdown, testthat, airway, IRanges, here |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | tidySummarizedExperiment |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | plyxp_1.7.3.tar.gz |
| Windows Binary (x86_64) | plyxp_1.7.1.zip |
| macOS Binary (big-sur-x86_64) | plyxp_1.7.3.tgz |
| macOS Binary (sonoma-arm64) | plyxp_1.7.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/plyxp |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/plyxp |
| Bioc Package Browser | https://code.bioconductor.org/browse/plyxp/ |
| Package Short Url | https://bioconductor.org/packages/plyxp/ |
| Package Downloads Report | Download Stats |