oligoClasses
This is the development version of oligoClasses; for the stable release version, see oligoClasses.
Classes for high-throughput arrays supported by oligo and crlmm
Bioconductor version: Development (3.24)
This package contains class definitions, validity checks, and initialization methods for classes used by the oligo and crlmm packages.
Author: Benilton Carvalho and Robert Scharpf
Maintainer: Benilton Carvalho <beniltoncarvalho at gmail.com> and Robert Scharpf <rscharpf at jhsph.edu>
citation("oligoClasses")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("oligoClasses")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | Infrastructure, Software |
| Version | 1.75.0 |
| In Bioconductor since | BioC 2.1 (R-2.6) (19 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.14) |
| Imports | BiocGenerics(>= 0.27.1), Biobase(>= 2.17.8), methods, graphics, IRanges(>= 2.5.17), GenomicRanges(>= 1.23.7), SummarizedExperiment, Biostrings(>= 2.23.6), affyio(>= 1.23.2), foreach, BiocManager, utils, S4Vectors(>= 0.9.25), RSQLite, DBI, ff |
| System Requirements | |
| URL |
See More
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | oligoClasses_1.75.0.tar.gz |
| Windows Binary (x86_64) | oligoClasses_1.75.0.zip |
| macOS Binary (big-sur-x86_64) | oligoClasses_1.75.0.tgz |
| macOS Binary (sonoma-arm64) | oligoClasses_1.75.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/oligoClasses |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/oligoClasses |
| Bioc Package Browser | https://code.bioconductor.org/browse/oligoClasses/ |
| Package Short Url | https://bioconductor.org/packages/oligoClasses/ |
| Package Downloads Report | Download Stats |