iClusterPlus
This is the development version of iClusterPlus; for the stable release version, see iClusterPlus.
Integrative clustering of multi-type genomic data
Bioconductor version: Development (3.24)
Integrative clustering of multiple genomic data using a joint latent variable model.
Author: Qianxing Mo, Ronglai Shen
Maintainer: Qianxing Mo <qianxing.mo at moffitt.org>, Ronglai Shen <shenr at mskcc.org>
citation("iClusterPlus")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("iClusterPlus")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iClusterPlus")| iCluster analysis of glioblastoma multiforme multi-omics data | HTML |
| iCluster analysis of single cell multi-omics data | HTML |
| iCluster analysis of uveal melanoma multi-omics data | HTML |
| iClusterPlus | |
| iManual.pdf | |
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | Clustering, Multi-omics, Software |
| Version | 1.49.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (12.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 4.1.0), irlba, parallel |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | RUnit, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | MultiDataSet |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | iClusterPlus_1.49.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | iClusterPlus_1.49.0.tgz |
| macOS Binary (sonoma-arm64) | iClusterPlus_1.49.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/iClusterPlus |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/iClusterPlus |
| Bioc Package Browser | https://code.bioconductor.org/browse/iClusterPlus/ |
| Package Short Url | https://bioconductor.org/packages/iClusterPlus/ |
| Package Downloads Report | Download Stats |