dks
This is the development version of dks; for the stable release version, see dks.
The double Kolmogorov-Smirnov package for evaluating multiple testing procedures.
DOI: 10.18129/B9.bioc.dks
Bioconductor version: Development (3.24)
The dks package consists of a set of diagnostic functions for multiple testing methods. The functions can be used to determine if the p-values produced by a multiple testing procedure are correct. These functions are designed to be applied to simulated data. The functions require the entire set of p-values from multiple simulated studies, so that the joint distribution can be evaluated.
Author: Jeffrey T. Leek <jleek at jhsph.edu>
Maintainer: Jeffrey T. Leek <jleek at jhsph.edu>
citation("dks")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("dks")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("dks")| dksTutorial | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | MultipleComparison, QualityControl, Software |
| Version | 1.59.0 |
| In Bioconductor since | BioC 2.9 (R-2.14) (15 years) |
| License | GPL |
| Depends | R (>= 2.8) |
| Imports | cubature |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
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| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | dks_1.59.0.tar.gz |
| Windows Binary (x86_64) | dks_1.59.0.zip (64-bit only) |
| macOS Binary (big-sur-x86_64) | dks_1.59.0.tgz |
| macOS Binary (sonoma-arm64) | dks_1.59.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/dks |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/dks |
| Bioc Package Browser | https://code.bioconductor.org/browse/dks/ |
| Package Short Url | https://bioconductor.org/packages/dks/ |
| Package Downloads Report | Download Stats |