consensus
This is the development version of consensus; for the stable release version, see consensus.
Cross-platform consensus analysis of genomic measurements via interlaboratory testing method
Bioconductor version: Development (3.24)
An implementation of the American Society for Testing and Materials (ASTM) Standard E691 for interlaboratory testing procedures, designed for cross-platform genomic measurements. Given three (3) or more genomic platforms or laboratory protocols, this package provides interlaboratory testing procedures giving per-locus comparisons for sensitivity and precision between platforms.
Author: Tim Peters
Maintainer: Tim Peters <t.peters at garvan.org.au>
citation("consensus")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("consensus")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("consensus")| Fitting and visualising row-linear models with \texttt{consensus} | R Script | |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataRepresentation, GeneExpression, Microarray, QualityControl, RNASeq, Regression, Software |
| Version | 1.31.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (8 years) |
| License | BSD_3_clause + file LICENSE |
| Depends | R (>= 3.5), RColorBrewer |
| Imports | matrixStats, gplots, grDevices, methods, graphics, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | knitr, RUnit, rmarkdown, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | consensus_1.31.0.tar.gz |
| Windows Binary (x86_64) | consensus_1.31.0.zip |
| macOS Binary (big-sur-x86_64) | consensus_1.31.0.tgz |
| macOS Binary (sonoma-arm64) | consensus_1.31.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/consensus |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/consensus |
| Bioc Package Browser | https://code.bioconductor.org/browse/consensus/ |
| Package Short Url | https://bioconductor.org/packages/consensus/ |
| Package Downloads Report | Download Stats |