chihaya
This is the development version of chihaya; for the stable release version, see chihaya.
Save Delayed Operations to a HDF5 File
Bioconductor version: Development (3.24)
Saves the delayed operations of a DelayedArray to a HDF5 file. This enables efficient recovery of the DelayedArray's contents in other languages and analysis frameworks.
Author: Aaron Lun [cre, aut]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("chihaya")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("chihaya")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("chihaya")| User guide | HTML | R Script |
| Reference Manual |
Details
| biocViews | DataImport, DataRepresentation, Software |
| Version | 1.13.0 |
| In Bioconductor since | BioC 3.17 (R-4.3) (3.5 years) |
| License | GPL-3 |
| Depends | DelayedArray |
| Imports | methods, Matrix, rhdf5, Rcpp, HDF5Array |
| System Requirements | C++17, GNU make |
| URL | https://github.com/ArtifactDB/chihaya-R |
| Bug Reports | https://github.com/ArtifactDB/chihaya-R/issues |
See More
| Suggests | BiocGenerics, S4Vectors, BiocSingular, ResidualMatrix, BiocStyle, testthat, rmarkdown, knitr |
| Linking To | Rcpp, Rhdf5lib |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | alabaster.matrix |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | chihaya_1.13.0.tar.gz |
| Windows Binary (x86_64) | chihaya_1.13.0.zip |
| macOS Binary (big-sur-x86_64) | chihaya_1.13.0.tgz |
| macOS Binary (sonoma-arm64) | chihaya_1.13.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/chihaya |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/chihaya |
| Bioc Package Browser | https://code.bioconductor.org/browse/chihaya/ |
| Package Short Url | https://bioconductor.org/packages/chihaya/ |
| Package Downloads Report | Download Stats |