chevreulShiny
This is the development version of chevreulShiny; for the stable release version, see chevreulShiny.
Tools for managing SingleCellExperiment objects as projects
Bioconductor version: Development (3.23)
Tools for managing SingleCellExperiment objects as projects. Includes functions for analysis and visualization of single-cell data. Also included is a shiny app for visualization of pre-processed scRNA data. Supported by NIH grants R01CA137124 and R01EY026661 to David Cobrinik.
Author: Kevin Stachelek [aut, cre]
, Bhavana Bhat [aut]
Maintainer: Kevin Stachelek <kevin.stachelek at gmail.com>
citation("chevreulShiny")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("chevreulShiny")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("chevreulShiny")| Preprocessing | HTML | R Script |
| Shiny App | HTML | R Script |
| Reference Manual |
Details
| biocViews | Coverage, DataImport, DimensionReduction, GeneExpression, Normalization, Preprocessing, QualityControl, RNASeq, Sequencing, SingleCell, Software, Transcription, Transcriptomics, Visualization |
| Version | 1.3.0 |
| In Bioconductor since | BioC 3.21 (R-4.5) (0.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.5.0), SingleCellExperiment, shiny (>= 1.6.0), shinydashboard, chevreulProcess, chevreulPlot |
| Imports | alabaster.base, clustree, ComplexHeatmap, DataEditR (>= 0.0.9), DBI, dplyr, DT, EnhancedVolcano, fs, future, ggplot2, ggplotify, grDevices, methods, patchwork, plotly, purrr, rappdirs, readr, RSQLite, S4Vectors, scales, shinyFiles, shinyhelper, shinyjs, shinyWidgets, stats, stringr, tibble, tidyr, tidyselect, utils, waiter, wiggleplotr |
| System Requirements | |
| URL | https://github.com/whtns/chevreulShiny https://whtns.github.io/chevreulShiny/ |
| Bug Reports | https://github.com/cobriniklab/chevreulShiny/issues |
See More
| Suggests | BiocStyle, knitr, RefManageR, rmarkdown, testthat (>= 3.0.0), EnsDb.Mmusculus.v79, EnsDb.Hsapiens.v86 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | chevreulShiny_1.3.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | chevreulShiny_1.3.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/chevreulShiny |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/chevreulShiny |
| Bioc Package Browser | https://code.bioconductor.org/browse/chevreulShiny/ |
| Package Short Url | https://bioconductor.org/packages/chevreulShiny/ |
| Package Downloads Report | Download Stats |