biocroxytest
This is the development version of biocroxytest; for the stable release version, see biocroxytest.
Handle Long Tests in Bioconductor Packages
Bioconductor version: Development (3.24)
This package provides a roclet for roxygen2 that identifies and processes code blocks in your documentation marked with `@longtests`. These blocks should contain tests that take a long time to run and thus cannot be included in the regular test suite of the package. When you run `roxygen2::roxygenise` with the `longtests_roclet`, it will extract these long tests from your documentation and save them in a separate directory. This allows you to run these long tests separately from the rest of your tests, for example, on a continuous integration server that is set up to run long tests.
Author: Francesc Catala-Moll [aut, cre]
Maintainer: Francesc Catala-Moll <fcatala at irsicaixa.es>
citation("biocroxytest")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("biocroxytest")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("biocroxytest")| Introduction to biocroxytest | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, Software |
| Version | 1.9.0 |
| In Bioconductor since | BioC 3.19 (R-4.4) (2.5 years) |
| License | GPL (>= 3) |
| Depends | R (>= 4.4.0) |
| Imports | cli, glue, roxygen2, stringr |
| System Requirements | |
| URL | https://github.com/xec-cm/biocroxytest |
| Bug Reports | https://github.com/xec-cm/biocroxytest/issues |
See More
| Suggests | BiocStyle, here, knitr, rmarkdown, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | biocroxytest_1.9.0.tar.gz |
| Windows Binary (x86_64) | biocroxytest_1.9.0.zip |
| macOS Binary (big-sur-x86_64) | biocroxytest_1.9.0.tgz |
| macOS Binary (sonoma-arm64) | biocroxytest_1.9.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/biocroxytest |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/biocroxytest |
| Bioc Package Browser | https://code.bioconductor.org/browse/biocroxytest/ |
| Package Short Url | https://bioconductor.org/packages/biocroxytest/ |
| Package Downloads Report | Download Stats |