MiPP
This is the development version of MiPP; for the stable release version, see MiPP.
Misclassification Penalized Posterior Classification
Bioconductor version: Development (3.24)
This package finds optimal sets of genes that seperate samples into two or more classes.
Author: HyungJun Cho <hj4cho at korea.ac.kr>, Sukwoo Kim <s4kim at korea.ac.kr>, Mat Soukup <soukup at fda.gov>, and Jae K. Lee <jaeklee at virginia.edu>
Maintainer: Sukwoo Kim <s4kim at korea.ac.kr>
citation("MiPP")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("MiPP")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MiPP")| MiPP Overview | |
| Reference Manual |
Details
| biocViews | Classification, Microarray, Software |
| Version | 1.85.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 21 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.4) |
| Imports | Biobase, e1071, MASS, stats |
| System Requirements | |
| URL | http://www.healthsystem.virginia.edu/internet/hes/biostat/bioinformatics/ |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MiPP_1.85.0.tar.gz |
| Windows Binary (x86_64) | MiPP_1.85.0.zip |
| macOS Binary (big-sur-x86_64) | MiPP_1.85.0.tgz |
| macOS Binary (sonoma-arm64) | MiPP_1.85.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MiPP |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MiPP |
| Bioc Package Browser | https://code.bioconductor.org/browse/MiPP/ |
| Package Short Url | https://bioconductor.org/packages/MiPP/ |
| Package Downloads Report | Download Stats |