MGFR

This is the development version of MGFR; for the stable release version, see MGFR.

Marker Gene Finder in RNA-seq data

Bioconductor version: Development (3.24)

The package is designed to detect marker genes from RNA-seq data.

Author: Khadija El Amrani

Maintainer: Khadija El Amrani <a.khadija at gmx.de>

Citation (from within R, enter citation("MGFR")):

Seminal Bioconductor project articles:

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.

Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("MGFR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MGFR")

Using MGFR	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GeneExpression, Genetics, ImmunoOncology, RNASeq, Software
Version	1.39.0
In Bioconductor since	BioC 3.4 (R-3.3) (10 years)
License	GPL-3
Depends	R (>= 3.5)
Imports	biomaRt, annotate
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me	sampleClassifier
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MGFR_1.39.0.tar.gz
Windows Binary (x86_64)	MGFR_1.39.0.zip
macOS Binary (big-sur-x86_64)	MGFR_1.39.0.tgz
macOS Binary (sonoma-arm64)	MGFR_1.39.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MGFR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MGFR
Bioc Package Browser	https://code.bioconductor.org/browse/MGFR/
Package Short Url	https://bioconductor.org/packages/MGFR/
Package Downloads Report	Download Stats