LBE

This is the development version of LBE; for the stable release version, see LBE.

Estimation of the false discovery rate

Bioconductor version: Development (3.24)

LBE is an efficient procedure for estimating the proportion of true null hypotheses, the false discovery rate (and so the q-values) in the framework of estimating procedures based on the marginal distribution of the p-values without assumption for the alternative hypothesis.

Author: Cyril Dalmasso

Maintainer: Cyril Dalmasso <cyril.dalmasso at univ-evry.fr>

Citation (from within R, enter citation("LBE")):

Seminal Bioconductor project articles:

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.

Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("LBE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LBE")

LBE Vignette	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	MultipleComparison, Software
Version	1.81.0
In Bioconductor since	BioC 2.0 (R-2.5) (19.5 years)
License	GPL-2
Depends	stats
Imports	graphics, stats, utils
System Requirements
URL

Suggests	qvalue
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	LBE_1.81.0.tar.gz
Windows Binary (x86_64)	LBE_1.81.0.zip
macOS Binary (big-sur-x86_64)	LBE_1.81.0.tgz
macOS Binary (sonoma-arm64)	LBE_1.81.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/LBE
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/LBE
Bioc Package Browser	https://code.bioconductor.org/browse/LBE/
Package Short Url	https://bioconductor.org/packages/LBE/
Package Downloads Report	Download Stats