BLMA
This is the development version of BLMA; for the stable release version, see BLMA.
BLMA: A package for bi-level meta-analysis
Bioconductor version: Development (3.24)
Suit of tools for bi-level meta-analysis. The package can be used in a wide range of applications, including general hypothesis testings, differential expression analysis, functional analysis, and pathway analysis.
Author: Tin Nguyen <tinn at auburn.edu>, Hung Nguyen <pzb00047 at auburn.edu>, and Sorin Draghici <sorin at wayne.edu>
Maintainer: Van-Dung Pham <dvp0001 at auburn.edu>
citation("BLMA")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("BLMA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BLMA")| BLMA | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression, GeneSetEnrichment, Microarray, Pathways, Software |
| Version | 1.37.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (9.5 years) |
| License | GPL (>=2) |
| Depends | ROntoTools, GSA, PADOG, limma, graph, stats, utils, parallel, Biobase, metafor, methods |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | RUnit, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BLMA_1.37.0.tar.gz |
| Windows Binary (x86_64) | BLMA_1.37.0.zip |
| macOS Binary (big-sur-x86_64) | BLMA_1.37.0.tgz |
| macOS Binary (sonoma-arm64) | BLMA_1.37.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BLMA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BLMA |
| Bioc Package Browser | https://code.bioconductor.org/browse/BLMA/ |
| Package Short Url | https://bioconductor.org/packages/BLMA/ |
| Package Downloads Report | Download Stats |