AnVILBase
This is the development version of AnVILBase; for the stable release version, see AnVILBase.
Generic functions for interacting with the AnVIL ecosystem
Bioconductor version: Development (3.24)
Provides generic functions for interacting with the AnVIL ecosystem. Packages that use either GCP or Azure in AnVIL are built on top of AnVILBase. Extension packages will provide methods for interacting with other cloud providers.
Author: Marcel Ramos [aut, cre]
, Martin Morgan [aut, ctb]
, NIH NHGRI U24HG004059 [fnd]
Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>
citation("AnVILBase")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("AnVILBase")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AnVILBase")| Introduction to AnVILBase | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, Software |
| Version | 1.7.0 |
| In Bioconductor since | BioC 3.20 (R-4.4) (2 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.5.0) |
| Imports | httr, httr2, dplyr, jsonlite, methods, tibble |
| System Requirements | |
| URL | https://github.com/Bioconductor/AnVILBase |
| Bug Reports | https://github.com/Bioconductor/AnVILBase/issues |
See More
| Suggests | AnVIL, AnVILAz, AnVILGCP, BiocStyle, GCPtools, knitr, rmarkdown, testthat (>= 3.0.0), tinytest |
| Linking To | |
| Enhances | |
| Depends On Me | AnVIL, AnVILWorkflow |
| Imports Me | AnVILAz, AnVILGCP, GCPtools |
| Suggests Me | terraTCGAdata |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | AnVILBase_1.7.0.tar.gz |
| Windows Binary (x86_64) | AnVILBase_1.7.0.zip |
| macOS Binary (big-sur-x86_64) | AnVILBase_1.7.0.tgz |
| macOS Binary (sonoma-arm64) | AnVILBase_1.7.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/AnVILBase |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AnVILBase |
| Bioc Package Browser | https://code.bioconductor.org/browse/AnVILBase/ |
| Package Short Url | https://bioconductor.org/packages/AnVILBase/ |
| Package Downloads Report | Download Stats |