Ullrich K (2026). MSA2dist: MSA2dist calculates pairwise distances for DNAStringSet/AAStringSet using custom scoring, conducts codon analyses (including dNdS), and estimates Dxy/FST. doi:10.18129/B9.bioc.MSA2dist. R package version 1.17.8, https://bioconductor.org/packages/MSA2dist.