Package: timeOmics
Title: Time-Course Multi-Omics data integration
Version: 1.25.0
Authors@R: 
    c(person("Antoine","Bodein", role = c("aut", "cre"), email = "antoine.bodein.1@ulaval.ca"),
      person("Olivier", "Chapleur", role = c("aut")),
      person("Kim-Anh", "Le Cao", role = c("aut")),
      person("Arnaud", "Droit", role = c("aut")))
Description: timeOmics is a generic data-driven framework to integrate
        multi-Omics longitudinal data measured on the same biological
        samples and select key temporal features with strong
        associations within the same sample group. The main steps of
        timeOmics are: 1. Plaform and time-specific normalization and
        filtering steps; 2. Modelling each biological into one time
        expression profile; 3. Clustering features with the same
        expression profile over time; 4. Post-hoc validation step.
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: dplyr, tidyr, tibble, purrr, magrittr, ggplot2, stringr,
        ggrepel, lmtest, plyr, checkmate
biocViews:
        Clustering,FeatureExtraction,TimeCourse,DimensionReduction,Software,
        Sequencing, Microarray, Metabolomics, Metagenomics, Proteomics,
        Classification, Regression, ImmunoOncology, GenePrediction,
        MultipleComparison
Depends: mixOmics, R (>= 4.0)
RoxygenNote: 7.3.1
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, rmarkdown, testthat, snow, tidyverse,
        igraph, gplots
Remotes: cran/lmms
BugReports: https://github.com/abodein/timeOmics/issues
Config/pak/sysreqs: cmake libfreetype6-dev libglpk-dev libglu1-mesa-dev
        make texlive libicu-dev libpng-dev libuv1-dev libxml2-dev
        libgl1-mesa-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:52:22 UTC
RemoteUrl: https://github.com/bioc/timeOmics
RemoteRef: HEAD
RemoteSha: d20cc9f5ffbd3c799a8a16354cc784026377133f
NeedsCompilation: no
Packaged: 2026-05-30 09:44:57 UTC; root
Author: Antoine Bodein [aut, cre],
  Olivier Chapleur [aut],
  Kim-Anh Le Cao [aut],
  Arnaud Droit [aut]
Maintainer: Antoine Bodein <antoine.bodein.1@ulaval.ca>
Built: R 4.6.0; ; 2026-05-30 10:14:52 UTC; windows
