# Generated by roxygen2: do not edit by hand

export(CIP_GIP)
export(CIP_GIP_test)
export(FCtoExpression)
export(Results_comparison_measure)
export(asmbPLSDA.cv.kcv)
export(asmbPLSDA.cv.loo)
export(biological_link_function)
export(calculate_pvalues)
export(celltype_mapping)
export(celltype_recap)
export(center_scale)
export(check_hyperparameters)
export(check_mapping_organism)
export(check_pathway)
export(check_superpathway)
export(check_superpathway_input)
export(clean_mfa_data)
export(compute_IC95)
export(compute_final_measures)
export(compute_permutation_stats)
export(compute_pvalue)
export(compute_validation_metrics)
export(create_fit_model)
export(create_hyperparameters)
export(create_mapping_organism)
export(create_pathway)
export(create_superpathway)
export(create_superpathway_input)
export(deflate_prediction)
export(derive_contributions)
export(derive_scores)
export(detect_gene_type)
export(diff_expressed)
export(evaluate_performance)
export(evaluate_quantile_combinations)
export(execute_parallel_cv)
export(execute_sequential_cv)
export(fitOptimal)
export(fit_mfa_imputer)
export(fit_permuted_model)
export(gene_contrib)
export(generate_null_distributions)
export(get_indices)
export(get_measure_index)
export(get_train_val_sets)
export(initialize_results)
export(jackknife_CIP_GIP)
export(matrixToBlock)
export(multiple_check)
export(multiple_fitOptimal)
export(multiple_singISTrecapitulations)
export(orthology_mapping)
export(perform_cv)
export(performance_measures)
export(permut_asmbplsda)
export(permut_asmbplsda_kcv)
export(permute_X_matrix)
export(permute_Y_matrix)
export(predict_mfa_imputer)
export(pullGeneSet)
export(quantile_computation)
export(render_multiple_outputs)
export(restore_removed_columns)
export(retrieve_one2one_orthologs)
export(select_optimal_PLS)
export(select_samples)
export(setGeneSetsCelltype)
export(singIST_treat)
export(singISTrecapitulations)
export(subsampling_CIP_GIP)
export(superpathway_recap)
export(update_block)
export(update_group_sizes)
export(wilcox_CIP_GIP)
import(BiocParallel)
import(FactoMineR)
import(Seurat)
import(SeuratObject)
import(asmbPLS)
import(biomaRt)
import(checkmate)
import(data.table)
import(msigdb)
import(scran)
import(stats)
import(stringr)
importFrom(FactoMineR,MFA)
importFrom(GSEABase,geneIds)
importFrom(S4Vectors,DataFrame)
importFrom(SingleCellExperiment,sizeFactors)
importFrom(missMDA,imputeMFA)
importFrom(purrr,pmap_int)
