Encoding: UTF-8
Type: Package
Package: peco
Version: 1.23.0
Title: A Supervised Approach for **P**r**e**dicting **c**ell Cycle
        Pr**o**gression using scRNA-seq data
Authors@R: c(
        person("Chiaowen Joyce","Hsiao", email="joyce.hsiao1@gmail.com", 
                    role=c("aut","cre")),
        person("Matthew", "Stephens", email="stephens999@gmail.com", role="aut"),
        person("John", "Blischak", email = "jdblischak@gmail.com", role="ctb"),
        person("Peter", "Carbonetto", email = "peter.carbonetto@gmail.com",
                role="ctb"))
Description: Our approach provides a way to assign continuous cell
        cycle phase using scRNA-seq data, and consequently, allows to
        identify cyclic trend of gene expression levels along the cell
        cycle. This package provides method and training data, which
        includes scRNA-seq data collected from 6 individual cell lines
        of induced pluripotent stem cells (iPSCs), and also continuous
        cell cycle phase derived from FUCCI fluorescence imaging data.
URL: https://github.com/jhsiao999/peco
BugReports: https://github.com/jhsiao999/peco/issues
License: GPL (>= 3)
Depends: R (>= 3.5.0)
Imports: assertthat, circular, conicfit, doParallel, foreach, genlasso
        (>= 1.4), graphics, methods, parallel, scater,
        SingleCellExperiment, SummarizedExperiment, stats, utils
Suggests: knitr, rmarkdown
biocViews: Sequencing, RNASeq, GeneExpression, Transcriptomics,
        SingleCell, Software, StatisticalMethod, Classification,
        Visualization
VignetteBuilder: knitr
RoxygenNote: 6.1.1
Config/pak/sysreqs: libcairo2-dev libfontconfig1-dev libfreetype6-dev
        libfribidi-dev libglpk-dev libharfbuzz-dev libicu-dev
        libjpeg-dev libpng-dev libtiff-dev libwebp-dev libxml2-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:58:02 UTC
RemoteUrl: https://github.com/bioc/peco
RemoteRef: HEAD
RemoteSha: 92a92cdde91715b6a8bc3947054652cb8ae12d52
NeedsCompilation: no
Packaged: 2026-02-08 09:46:50 UTC; root
Author: Chiaowen Joyce Hsiao [aut, cre],
  Matthew Stephens [aut],
  John Blischak [ctb],
  Peter Carbonetto [ctb]
Maintainer: Chiaowen Joyce Hsiao <joyce.hsiao1@gmail.com>
Built: R 4.6.0; ; 2026-02-08 09:48:47 UTC; windows
