Microbiome Time Series Analysis

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Documentation for package ‘miaTime’ version 1.3.1

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

miaTime-package	'miaTime' Package.
addBaselineDivergence	Beta diversity between the baseline and later time steps
addBaselineDivergence-method	Beta diversity between the baseline and later time steps
addBimodality	Calculate coefficient of bimodality.
addBimodality-method	Calculate coefficient of bimodality.
addShortTermChange	Short term changes in abundance
addShortTermChange-method	Short term changes in abundance
addStability	Estimate stability
addStability-method	Estimate stability
addStepwiseDivergence	Beta diversity between consecutive time steps
addStepwiseDivergence-method	Beta diversity between consecutive time steps
crohn_survival	Survival microbiome data from 150 individuals with longitudinal measurements
getBaselineDivergence	Beta diversity between the baseline and later time steps
getBaselineDivergence-method	Beta diversity between the baseline and later time steps
getBimodality	Calculate coefficient of bimodality.
getBimodality-method	Calculate coefficient of bimodality.
getShortTermChange	Short term changes in abundance
getShortTermChange-method	Short term changes in abundance
getStability	Estimate stability
getStability-method	Estimate stability
getStepwiseDivergence	Beta diversity between consecutive time steps
getStepwiseDivergence-method	Beta diversity between consecutive time steps
hitchip1006	HITChip Atlas with 1006 Western Adults
HMP_2019_ibdmdb	HMP_2019_ibdmdb
Kumaraswamy2024	Kumaraswamy2024
miaTime	'miaTime' Package.
minimalgut	Human Gut Minimal Microbiome Profiling Data
SilvermanAGutData	SilvermanAGutData
temporalMicrobiome20	Gut Microbiome Profiling 20 Belgian Women