Package: glycoTraitR
Type: Package
Title: Compute and analyze the glycan structrual traits from GPSM data
Version: 0.99.2
Authors@R: c(person("Bingyuan", "Zhang",
              email = "zhang.bingyuan.w8@f.mail.nagoya-u.ac.jp",
              role = c("aut", "cre"),
              comment = c(ORCID = "0000-0002-4892-323X")), 
             person("Koichi", "Himori",
              email = "himori.koichi.b5@f.mail.nagoya-u.ac.jp",
              role = c("aut")),
             person("Yusuke", "Matsui",
              email = "matsui.yusuke.d4@f.mail.nagoya-u.ac.jp",
              role = c("aut", "fnd")))
Description: GlycoTraitR is an R package for analyzing glycoproteomics
        data, particularly glycopeptide-spectrum matches (GPSMs). It
        supports results generated by the pGlyco3 and Glyco-Decipher
        search engines. The package parses glycan structures, computes
        monosaccharide compositions and structural traits, and performs
        differential analysis of glycan heterogeneity. It constructs
        trait-by-PSM matrices stored in a SummarizedExperiment object,
        supports user-defined structural motifs, and provides
        visualization utilities for interpreting glycan trait changes.
URL: https://github.com/matsui-lab/glycoTraitR
License: MIT + file LICENSE
Encoding: UTF-8
Imports: igraph, SummarizedExperiment, pbapply, car, ggplot2, rlang
Suggests: knitr, BiocStyle, rmarkdown, markdown, testthat (>= 3.0.0)
biocViews: Proteomics, MassSpectrometry, Visualization, Software
RoxygenNote: 7.3.3
VignetteBuilder: knitr
BugReports: https://github.com/matsui-lab/glycoTraitR/issues
Depends: R (>= 4.4.0)
Config/testthat/edition: 3
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libxml2-dev
        libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-01-29 22:28:43 UTC
RemoteUrl: https://github.com/bioc/glycoTraitR
RemoteRef: HEAD
RemoteSha: 9be6f65fe839feaa65e0c8590d6cba58d7194a9e
NeedsCompilation: no
Packaged: 2026-02-14 02:48:11 UTC; root
Author: Bingyuan Zhang [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-4892-323X>),
  Koichi Himori [aut],
  Yusuke Matsui [aut, fnd]
Maintainer: Bingyuan Zhang <zhang.bingyuan.w8@f.mail.nagoya-u.ac.jp>
Built: R 4.6.0; ; 2026-02-14 02:58:15 UTC; windows
