Package: fCCAC
Version: 1.37.0
Date: 2025-04-07
Type: Package
Title: functional Canonical Correlation Analysis to evaluate Covariance
        between nucleic acid sequencing datasets
Authors@R: 
    c(person(given = "Pedro",
           family = "Madrigal",
           role = c("aut", "cre"),
           email = "pmadrigal@ebi.ac.uk",
           comment = c(ORCID = "0000-0003-1959-8199")
      )
    )
Description: Computational evaluation of variability across DNA or RNA
        sequencing datasets is a crucial step in genomics, as it allows
        both to evaluate reproducibility of replicates, and to compare
        different datasets to identify potential correlations. fCCAC
        applies functional Canonical Correlation Analysis to allow the
        assessment of: (i) reproducibility of biological or technical
        replicates, analyzing their shared covariance in higher order
        components; and (ii) the associations between different
        datasets. fCCAC represents a more sophisticated approach that
        complements Pearson correlation of genomic coverage.
Depends: R (>= 4.2.0), S4Vectors, IRanges, GenomicRanges, grid
Imports: fda, RColorBrewer, genomation, ggplot2, ComplexHeatmap,
        grDevices, stats, utils
Suggests: RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown
License: Artistic-2.0
LazyLoad: yes
biocViews: Epigenetics, Transcription, Sequencing, Coverage, ChIPSeq,
        FunctionalGenomics, RNASeq, ATACSeq, MNaseSeq
URL: https://github.com/pmb59/fCCAC
BugReports: https://github.com/pmb59/fCCAC/issues
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev perl libx11-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:35:32 UTC
RemoteUrl: https://github.com/bioc/fCCAC
RemoteRef: HEAD
RemoteSha: 5500c709df5eb11051601c6d7c6f6b3e3825d832
NeedsCompilation: no
Packaged: 2026-02-08 09:21:33 UTC; root
Author: Pedro Madrigal [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-1959-8199>)
Maintainer: Pedro Madrigal <pmadrigal@ebi.ac.uk>
Built: R 4.6.0; ; 2026-02-08 09:23:37 UTC; windows
