# Detection and inference of differentially methylated regions from Whole Genome Bisulfite Sequencing

## Documentation for package ‘dmrseq’ version 1.31.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

annot.chr21 | annot.chr21: Annotation information for chromosome 21, hg38 genome
BS.chr21 | BS.chr21: Whole-genome bisulfite sequencing for chromosome 21 from Lister et al.
dmrPlotAnnotations | Add annotations to DMR plots
dmrs.ex | dmrs.ex: Example results of DMRs
dmrseq | Main function for detecting and evaluating significance of DMRs.
getAnnot | Retrieve annotation information
meanDiff | Function to compute raw mean methylation differences
plotDMRs | Plot Differentially Methylated Regions
plotEmpiricalDistribution | Plot the empirical distribution of the methylation beta vals or coverage
simDMRs | Simulate Differentially Methylated Regions