ctdR-package	ctdR-package
.annotate_genes	dot-annotate_genes
.assay_index	dot-assay_index
.as_expr_matrix	dot-as_expr_matrix
.attach_provenance	dot-attach_provenance
.build_interaction_table	dot-build_interaction_table
.CTDFile	CTDFile
.ctd_bfc	dot-ctd_bfc
.ctd_cache_dir	dot-ctd_cache_dir
.ctd_cache_has	dot-ctd_cache_has
.ctd_cache_load	dot-ctd_cache_load
.ctd_cache_save	dot-ctd_cache_save
.ctd_known_fields	dot-ctd_known_fields
.ctd_license_reminder	dot-ctd_license_reminder
.ctd_provenance_cached	dot-ctd_provenance_cached
.ctd_provenance_new	dot-ctd_provenance_new
.deduplicate_chemicals	dot-deduplicate_chemicals
.detect_id_type	dot-detect_id_type
.filter_gene_sets	dot-filter_gene_sets
.format_enrichment_result	dot-format_enrichment_result
.has_metadata_slot	dot-has_metadata_slot
.is_remote_url	dot-is_remote_url
.is_se	dot-is_se
.load_geneset_list	dot-load_geneset_list
.map_chemical_genes	dot-map_chemical_genes
.parse_ctd_header	dot-parse_ctd_header
.plot_camera	dot-plot_camera
.plot_gsva_heatmap	dot-plot_gsva_heatmap
.read_and_validate_ctd	dot-read_and_validate_ctd
.resolve_alpha_column	dot-resolve_alpha_column
.resolve_ctd_source	dot-resolve_ctd_source
.run_camera	dot-run_camera
.run_gsea	dot-run_gsea
.run_gsva	dot-run_gsva
.run_ora	dot-run_ora
.save_ctd_cache	dot-save_ctd_cache
.select_se_assay	dot-select_se_assay
.to_symbols	dot-to_symbols
.validate_enrichment_args	dot-validate_enrichment_args
.validate_expr_matrix	dot-validate_expr_matrix
.validate_expr_rownames	dot-validate_expr_rownames
as_genesets_CTD	as_genesets_CTD
CTDFile	CTDFile
CTDFile-class	CTDFile
ctdR	ctdR-package
ctdR-cache	ctdR-cache
ctdR-source	ctdR-source
ctd_cache	ctd_cache
ctd_provenance	ctd_provenance
enrichment_CTD	enrichment_CTD
gsea	gsea
import,CTDFile,ANY,ANY-method	CTDFile
import_CTD	import_CTD
ora	ora
plot_CTD	plot_CTD
print.ctd_provenance	ctd_provenance
utils-input	utils-input
