Package: condiments
Type: Package
Title: Differential Topology, Progression and Differentiation
Authors@R: c(person("Hector", "Roux de Bezieux", role = c("aut", "cre"),
                     email = "hector.rouxdebezieux@berkeley.edu",
		     comment = c(ORCID = "0000-0002-1489-8339")),
		person("Koen", "Van den Berge", role = c("aut" , "ctb")),
		person("Kelly","Street", role = c("aut", "ctb")))
Description: This package encapsulate many functions to conduct a
        differential topology analysis. It focuses on analyzing an
        'omic dataset with multiple conditions. While the package is
        mostly geared toward scRNASeq, it does not place any
        restriction on the actual input format.
Version: 1.19.0
License: MIT + file LICENSE
Encoding: UTF-8
URL: https://hectorrdb.github.io/condiments/index.html
Depends: R (>= 4.0)
VignetteBuilder: knitr
biocViews: RNASeq, Sequencing, Software, SingleCell, Transcriptomics,
        MultipleComparison, Visualization
BugReports: https://github.com/HectorRDB/condiments/issues
Imports: slingshot (>= 1.9), mgcv, RANN, stats, SingleCellExperiment,
        SummarizedExperiment, utils, magrittr, dplyr (>= 1.0), Ecume
        (>= 0.9.1), methods, pbapply, matrixStats, BiocParallel,
        TrajectoryUtils, igraph, distinct
RoxygenNote: 7.1.2
Suggests: knitr, testthat, rmarkdown, covr, viridis, ggplot2,
        RColorBrewer, randomForest, tidyr, TSCAN, DelayedMatrixStats
Config/pak/sysreqs: libcairo2-dev libfontconfig1-dev libfreetype6-dev
        libfribidi-dev libglpk-dev libharfbuzz-dev libicu-dev
        libjpeg-dev libpng-dev libtiff-dev libwebp-dev libxml2-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:07:39 UTC
RemoteUrl: https://github.com/bioc/condiments
RemoteRef: HEAD
RemoteSha: 68a222c7a59dcd9825932f40641c57db05d388cd
NeedsCompilation: no
Packaged: 2026-01-09 21:12:28 UTC; root
Author: Hector Roux de Bezieux [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-1489-8339>),
  Koen Van den Berge [aut, ctb],
  Kelly Street [aut, ctb]
Maintainer: Hector Roux de Bezieux <hector.rouxdebezieux@berkeley.edu>
Built: R 4.6.0; ; 2026-01-09 21:17:22 UTC; windows
