Package: celaref
Title: Single-cell RNAseq cell cluster labelling by reference
Version: 1.31.0
Authors@R: person("Sarah", "Williams", email = "sarah.williams1@monash.edu", role = c("aut", "cre"))
Description: After the clustering step of a single-cell RNAseq
        experiment, this package aims to suggest labels/cell types for
        the clusters, on the basis of similarity to a reference
        dataset. It requires a table of read counts per cell per gene,
        and a list of the cells belonging to each of the clusters, (for
        both test and reference data).
Depends: R (>= 3.5.0), SummarizedExperiment
Imports: MAST, ggplot2, Matrix, dplyr, magrittr, stats, utils, rlang,
        BiocGenerics, S4Vectors, readr, tibble, DelayedArray
Suggests: limma, parallel, knitr, rmarkdown, ExperimentHub, testthat
biocViews: SingleCell
VignetteBuilder: knitr
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Config/pak/sysreqs: libicu-dev libx11-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:48:27 UTC
RemoteUrl: https://github.com/bioc/celaref
RemoteRef: HEAD
RemoteSha: 3b5d808a4925f55a9259ccfb2eeec6761453eef2
NeedsCompilation: no
Packaged: 2026-07-03 17:33:21 UTC; root
Author: Sarah Williams [aut, cre]
Maintainer: Sarah Williams <sarah.williams1@monash.edu>
Built: R 4.6.1; ; 2026-07-03 17:35:01 UTC; windows
