BlaseData-class         Blase Data Object
MCA_PF_SCE              Malaria Cell Atlas Plasmodium falciparum for
                        BLASE Vignette
MappingResult           Blase Mapping Result
annotate_sce            Annotate a SCE with BLASE Mappings
as.BlaseData            Conversion to BlaseData
assign_pseudotime_bins
                        Assign Pseudotime Bins to a source object's
                        metadata
best_bin                Get best bin of a BLASE Mapping Results object.
best_correlation        Get best correlation of a BLASE Mapping Results
                        object.
bootstrap_iterations    Get the number of bootstrap iterations
                        performed for a BLASE Mapping Results object.
bulk_name               Get name of bulk of a BLASE Mapping Results
                        object.
bulk_name<-             Set name of bulk of a BLASE Mapping Results
                        object.
calculate_gene_peakedness
                        calculate_gene_peakedness
evaluate_parameters     Evaluate n_bins and n_genes for bin mapping
evaluate_top_n_genes    Evaluate Top Genes
find_best_params        Identify the Best Parameters For Your Dataset
gene_peakedness_spread_selection
                        Gene Peakedness Spread Selection
genes                   Get genes of a BLASE Data object.
genes<-                 Set genes of a BLASE Data object.
get_bins_as_bulk        Get a pseudobulk of bins with at least 2
                        replicates
get_top_n_genes         Get Top Genes From An AssociationTestResult
map_all_best_bins       Map many bulk samples in the same dataframe
map_best_bin            Map the best matching SC bin for a bulk sample
mapping_history         Get the mapping history for a BLASE Mapping
                        Results object.
metric                  Get the mapping history for a BLASE Mapping
                        Results object.
painter_microarray      Painter 2018 Plasmodium falciparum 48h asexual
                        lifecycle microarray data
plot_bin_population     Plot the populations of a bin
plot_find_best_params_results
                        Plot the results of the search for good
                        parameters
plot_gene_peakedness    plot_gene_peakedness
plot_mapping_result     Plot a summary of the mapping result
plot_mapping_result_corr
                        Plot a mapping result's correlation
plot_mapping_result_heatmap
                        Plot a mapping result heatmap
show,BlaseData-method   Show an BlaseData object
show,MappingResult-method
                        Show an MappingResult object
smooth_gene             smooth_gene
strong_mapping          Get if the result is strong for a BLASE Mapping
                        Results object.
top_2_distance          Get the difference in correlation between the
                        top 2 most correlated bins for a BLASE Mapping
                        Results object.
tradeSeq_BLASE_example_sce
                        TradeSeq Example SCE for BLASE Vignette
zhang_2021_heat_shock_bulk
                        Zhang 2021 Plasmodium falciparum heat shock
                        bulk data
