Package: VisiumIO
Title: Import Visium data from the 10X Space Ranger pipeline
Version: 1.7.7
Authors@R: c(
    person("Marcel", "Ramos", , "marcel.ramos@sph.cuny.edu", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-3242-0582")),
    person("Estella YiXing", "Dong", role = c("aut", "ctb")),
    person("Dario", "Righelli", role = c("aut", "ctb")),
    person("Helena", "Crowell", role = c("aut", "ctb")),
    person("NCI", role = "fnd",
           comment = c(GrantNo. = "U24CA289073"))
  )
Description: The package allows users to readily import spatial data
        obtained from either the 10X website or from the Space Ranger
        pipeline. Supported formats include tar.gz, h5, and mtx files.
        Multiple files can be imported at once with *List type of
        functions. The package represents data mainly as
        SpatialExperiment objects.
License: Artistic-2.0
Depends: R (>= 4.4.0), TENxIO
Imports: BiocBaseUtils, BiocGenerics, BiocIO (>= 1.15.1), jsonlite,
        methods, S4Vectors, SingleCellExperiment, SpatialExperiment,
        SummarizedExperiment
Suggests: arrow, BiocStyle, data.table, knitr, readr, rmarkdown, sf,
        tinytest
biocViews: Software, Infrastructure, DataImport, SingleCell, Spatial
VignetteBuilder: knitr
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
BugReports: https://github.com/waldronlab/VisiumIO/issues
URL: https://github.com/waldronlab/VisiumIO
Collate: 'TENxGeoJSON.R' 'TENxParquet-class.R' 'TENxSpatialCSV.R'
        'TENxSpatialList-class.R' 'TENxSpatialParquet.R'
        'TENxVisium-class.R' 'TENxVisiumList-class.R'
        'TENxVisiumHD-class.R' 'VisiumIO-package.R' 'utilities.R'
Date: 2025-12-24
Config/pak/sysreqs: libmagick++-dev gsfonts libicu-dev libssl-dev
        libx11-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-03-25 15:01:31 UTC
RemoteUrl: https://github.com/bioc/VisiumIO
RemoteRef: HEAD
RemoteSha: 989b6eba6767cb9ce4cfa49c651b3ee07f9f4b37
NeedsCompilation: no
Packaged: 2026-03-26 13:42:29 UTC; root
Author: Marcel Ramos [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3242-0582>),
  Estella YiXing Dong [aut, ctb],
  Dario Righelli [aut, ctb],
  Helena Crowell [aut, ctb],
  NCI [fnd] (GrantNo.: U24CA289073)
Maintainer: Marcel Ramos <marcel.ramos@sph.cuny.edu>
Built: R 4.6.0; ; 2026-03-26 13:49:22 UTC; windows
