Heatmaps for SummarizedExperiment Objects

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Documentation for package ‘SummarizedHeatmap’ version 0.99.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

SummarizedHeatmap-package	SummarizedHeatmap
assay-set-SummarizedHeatmap	Replace the assay of a SummarizedHeatmap
assay<--method	Replace the assay of a SummarizedHeatmap
assays-set-SummarizedHeatmap	Replace the assays of a SummarizedHeatmap
assays<--method	Replace the assays of a SummarizedHeatmap
clusterCols	Cluster columns
clusterHeatmap	Cluster rows and columns
clusterRows	Cluster rows
colDendro	Access stored column dendrogram
colDendro-method	Access stored column dendrogram
colOrder	Access column display order
colOrder-method	Access column display order
plotColData	Plot column annotations
plotColDendro	Plot the stored column dendrogram
plotHeatmap	Compose a complete heatmap with patchwork
plotHeatmapMain	Plot the assay as a ggplot heatmap
plotRowData	Plot row annotations
plotRowDendro	Plot the stored row dendrogram
rowDendro	Access stored row dendrogram
rowDendro-method	Access stored row dendrogram
rowOrder	Access row display order
rowOrder-method	Access row display order
show-method	Display a concise summary of a SummarizedHeatmap
SummarizedHeatmap	Create a SummarizedHeatmap
SummarizedHeatmap-class	SummarizedHeatmap class
[-method	Subset a SummarizedHeatmap