Package: SingleR
Title: Reference-Based Single-Cell RNA-Seq Annotation
Version: 2.13.1
Date: 2026-01-05
Authors@R: c(person("Dvir", "Aran", email="dvir.aran@ucsf.edu", role=c("aut", "cph")),
    person("Aaron", "Lun", email="infinite.monkeys.with.keyboards@gmail.com", role=c("ctb", "cre")),
    person("Daniel", "Bunis", role="ctb"),
    person("Jared", "Andrews", email = "jared.andrews07@gmail.com", role="ctb"),
    person("Friederike", "Dündar", email = "frd2007@med.cornell.edu", role="ctb"))
Description: Performs unbiased cell type recognition from single-cell
        RNA sequencing data, by leveraging reference transcriptomic
        datasets of pure cell types to infer the cell of origin of each
        single cell independently.
License: GPL-3
Depends: SummarizedExperiment
Imports: methods, Matrix, S4Vectors, DelayedArray, DelayedMatrixStats,
        BiocParallel, BiocNeighbors, stats, utils, Rcpp, beachmat (>=
        2.25.1)
LinkingTo: Rcpp, beachmat, assorthead (>= 1.3.5), BiocNeighbors
Suggests: testthat, knitr, rmarkdown, BiocStyle, BiocGenerics,
        SingleCellExperiment, scrapper (>= 1.3.14), scRNAseq, ggplot2,
        pheatmap, grDevices, gridExtra, viridis, celldex
biocViews: Software, SingleCell, GeneExpression, Transcriptomics,
        Classification, Clustering, Annotation
SystemRequirements: C++17
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.3.3
URL: https://github.com/SingleR-inc/SingleR
BugReports: https://github.com/SingleR-inc/SingleR/issues
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-01-05 10:05:14 UTC
RemoteUrl: https://github.com/bioc/SingleR
RemoteRef: HEAD
RemoteSha: 40ff41ae2387b3de6673ea516f437266caa08ace
NeedsCompilation: yes
Packaged: 2026-02-05 09:08:37 UTC; root
Author: Dvir Aran [aut, cph],
  Aaron Lun [ctb, cre],
  Daniel Bunis [ctb],
  Jared Andrews [ctb],
  Friederike Dündar [ctb]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>
Built: R 4.6.0; x86_64-w64-mingw32; 2026-02-05 09:12:02 UTC; windows
Archs: x64
